Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20magna_20[genbank_20GCA_5F001632505.1_202016-04-26] 28,801 sequences; 129,543,483 total letters Query= NC_023719.1 Length=497513 Score E Sequences producing significant alignments: (Bits) Value seq12429 114 4e-20 >seq12429 Length=692 Score = 114 bits (126), Expect = 4e-20 Identities = 204/294 (69%), Gaps = 3/294 (1%) Strand=Plus/Plus Query 69514 ATTGCTGGTAATGTTGGTACACCTGAAGCTGTTCGTGAACTTGAAAATGCAGGCGCAGAT 69573 || || || ||||| || || ||||||| ||| || || ||||| |||||||| Sbjct 32 ATCGCCGGCAATGTGGGCACGCCTGAAGGTGTGATCGACCTCGAAAACTGGGGCGCAGAC 91 Query 69574 GCTACAAAAGTTGGTATTGGCCCAGGTAAAGTATGTATTACTAAAATCAAAACTGGTTTT 69633 || || || || || |||||||| || || || || || ||| | ||||| || ||| Sbjct 92 GCCACCAAGGTCGGCATTGGCCCGGGCAAGGTGTGCATCACTCGCCTGAAAACGGGCTTT 151 Query 69634 GGTACTGGCGGCTGGCAG-TTAGCTGCATTGCGTTGGTGTTCAAAAGTAGCTACTAAACC 69692 || || |||||||||||| | ||| || || ||||| | || || || || || Sbjct 152 GGCACCGGCGGCTGGCAGCTCAGC-GCGCTGAAGTGGTGCGCCCGCGTCGCGACCAAGCC 210 Query 69693 AATAATTGCTGATGGTGGTATTCGTACTAACGGTGATATTGCTAAATCTGTACGTTTTGG 69752 || ||||| || ||||| || || |||| || ||||| || || |||||||| Sbjct 211 CATCATTGCCGACGGTGGCATACGCCACCACGGGGACATTGCCAAGAGCGTGCGTTTTGG 270 Query 69753 CGCTTCAATGGTTATGATTGGTTCGCTATTTGCGGGTCACGAGGAATCACCAGG 69806 ||| | ||||| ||| | || || || ||||| || || || ||||| || || Sbjct 271 CGCCGCGATGGTGATGGTGGGGTCCCTCTTTGCTGGCCATGA-GAATCCCCTGG 323 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1591322964666048