Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20magna_20[genbank_20GCA_5F001632505.1_202016-04-26] 28,801 sequences; 129,543,483 total letters Query= NC_023738.1 Length=106327 Score E Sequences producing significant alignments: (Bits) Value seq7706 118 7e-22 seq7643 98.7 7e-16 >seq7706 Length=455 Score = 118 bits (130), Expect = 7e-22 Identities = 147/201 (73%), Gaps = 3/201 (1%) Strand=Plus/Plus Query 94572 GAACGACAGCCGCGAGGGCACGTTGCTCTTGATGAGGCCCGTCACCACATCCACGGAGGG 94631 ||||| || || | ||| | |||| |||||| ||||| || | ||| ||||| ||||| Sbjct 111 GAACGCCATGCGGGTGGGGATGTTGGCCTTGATCAGGCCGGTGATCACGTCCACCGAGGG 170 Query 94632 CCGCTGCGTCGCCAGGACGAGATGAATGCCGGCCGCACGCGCCTTCTGCGCGATGCGGAC 94691 ||||| || || |||| || || ||||| ||||||||||||||||||||||| ||| | Sbjct 171 GCGCTGGGTGGCGAGGATCAGGTGGATGCCCGCCGCACGCGCCTTCTGCGCGATACGGGC 230 Query 94692 AATGTTGGCCTCAACCTCTTTCTTGTAGCCACCCATCATGAGGTCCGCGAGTTCATCCAC 94751 | || ||| || | |||||| | | |||||| | ||| |||| ||| || || Sbjct 231 ---GATGAGCTCTTCCACCTTCTTGCCGACGATCATCATCATGTCGGCGAATTCGTCGAC 287 Query 94752 CACTACCACGATGTAGGGGAG 94772 | ||||||||| ||| || Sbjct 288 GATGACCACGATGGTGGGCAG 308 >seq7643 Length=448 Score = 98.7 bits (108), Expect = 7e-16 Identities = 192/278 (69%), Gaps = 13/278 (5%) Strand=Plus/Minus Query 94497 GTCACCCATTCCCATGA--GCTGCTCGGCTCCGCCCTCGTCCAGGATCACCCGGCTATCG 94554 ||||||||| |||| | ||| ||||| || || ||| ||||| ||||| ||| Sbjct 380 GTCACCCATGCCCAGCAAGGCT--TCGGCGCCCATCTGGTCGAGGATGGTGCGGCTGTCG 323 Query 94555 GTGAGGGACGCTG---TGGCGAACGACAGCCGCGAGGGCACGTTGCTCTTGATGAGGCCC 94611 | ||| |||| ||| || |||||||| | || | ||| |||||| ||||| Sbjct 322 ATCTTGGA-GCTGACCTGG--AAGGACAGCCGGGTCGGGATATTGGCCTTGATCAGGCCG 266 Query 94612 GTCACCACATCCACGGAGGGCCGCTGCGTCGCCAGGACGAGATGAATGCCGGCCGCACGC 94671 || | |||||| || || |||||||| || ||||| | || || ||||||||||| || Sbjct 265 GTGATCACATCGACCGAAGGCCGCTGTGTGGCCAGAATCAGGTGGATGCCGGCCGCGCGG 206 Query 94672 GCCTTCTGCGCGATGCGGACAATGTTGGCCTCAACCTCTTTCTTGTAGCCACCCATCATG 94731 ||||| ||||| | |||| | || | || | | |||||| | | ||||||| Sbjct 205 GCCTTTTGCGCCAAGCGGGCGATCAGCTCTTCGATC---TTCTTGCCGACCACCATCATC 149 Query 94732 AGGTCCGCGAGTTCATCCACCACTACCACGATGTAGGG 94769 ||||| || | || || | || || |||||| |||| Sbjct 148 AGGTCGGCCAACTCGTCGATGACGACGACGATGAAGGG 111 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 340002213173168