Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20magna_20[genbank_20GCA_5F001632505.1_202016-04-26] 28,801 sequences; 129,543,483 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq1253 172 1e-37 seq512 91.5 3e-13 seq16310 87.8 4e-12 seq1952 87.8 4e-12 >seq1253 Length=553177 Score = 172 bits (190), Expect = 1e-37 Identities = 175/228 (77%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 |||||||| | |||||||| || || ||||| ||||| ||||| || || ||||| || Sbjct 468183 CCTCCTCTGAGGCGCAGAACCAAATGGAGAGTTGATTCCTTCTGGATGTTGTAATCGGAC 468124 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 | | | | || || || || || || ||||||||||| | | ||| ||||| || || Sbjct 468123 AAAGTACGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAAACGTTGCTGATCAGGTGGA 468064 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || |||||||||||||||||||| || || ||||| ||||| || ||| ||| || || Sbjct 468063 ATACCTTCCTTATCTTGAATCTTGGCCTTAACATTCTCAATAGTGTCAGAAGGCTCAACC 468004 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 || | ||| || || ||||| ||||| ||||| ||||| ||||||||| Sbjct 468003 TCAAGAGTGATGGTTTTGCCAGTCAATGTCTTGACAAAGATCTGCATT 467956 Score = 152 bits (168), Expect = 1e-31 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||| | | ||| | |||||| || || ||||||||||| || || ||||| || || Sbjct 470432 CCTCCACGAAGACGTAAAACTAAATGAAGGGTAGATTCTTTTTGAATGTTATAGTCTGAA 470373 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | ||| || || || || || || || ||||| || | ||| || || ||||| Sbjct 470372 AGCGTACGACCATCCTCAAGCTGCTTGCCGGCGAAGATCAGACGTTGCTGGTCGGGAGGA 470313 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || |||||||||||||| || || || || |||||||| || || || |||||| ||| Sbjct 470312 ATACCTTCCTTATCTTGGATTTTAGCCTTAACATTTTCGATTGTGTCTGAAGGTTCAACT 470253 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | || || || || || ||||||||||| ||||| |||||||| Sbjct 470252 TCGAGCGTGATAGTTTTCCCAGTCAACGTCTTGACAAAGATCTGCAT 470206 Score = 147 bits (162), Expect = 4e-30 Identities = 162/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||| ||||||||||| ||||| || ||||| || || |||||||| || | | | | ||| Sbjct 468775 ACGTAGAACTAAGTGAAGAGTCGACTCTTTTTGAATGTTATAATCGGACAAAGTACGACC 468716 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 ||||| | || ||||| |||||||| || | || |||||||| || || |||||||| Sbjct 468715 ATCTTCCAACTGCTTTCCGGCAAAGATGAGACGCTGCTGATCTGGGGGAATGCCTTCCTT 468656 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774 |||||||| ||||| || |||||||| || ||||| || || || || | || || Sbjct 468655 GTCTTGAATTTTTGCCTTGACATTTTCGATGGTATCCGATGGCTCAACCTCAAGGGTAAT 468596 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || || || || || || || || || |||||||| Sbjct 468595 AGTTTTCCCGGTTAAAGTTTTCACGAAGATCTGCAT 468560 Score = 100 bits (110), Expect = 6e-16 Identities = 85/105 (81%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 82707 CCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCC 82766 |||||||||||||||||||| || || || |||||||| || ||| ||||| ||||| Sbjct 468891 CCTTCCTTATCTTGAATCTTCGCCTTCACGTTTTCAATAGTGTCAGACGGTTCAACTTCA 468832 Query 82767 AAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 | || ||||| ||||||||||| || || ||||| || |||||| Sbjct 468831 AGCGTGATCGTTTTGCCTGTCAAGGTTTTGACAAAAATTTGCATT 468787 Score = 100 bits (110), Expect = 6e-16 Identities = 99/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 ||||||||| || ||||| || || ||||| ||||| |||||||| ||||| || || | Sbjct 469583 TACCTCCTCGCAGACGCAATACCAAATGCAGTGTAGACTCTTTCTGAATATTGTAGTCGG 469524 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 |||| ||| || ||||| | ||| ||||||||||| || |||| ||||| || || | Sbjct 469523 ATAGCGTTCGTCCATCTTCCAATTGCTTTCCAGCAAAAATAAGTCGCTGTTGGTCGGGTG 469464 Query 82702 GTATTCCT 82709 | || ||| Sbjct 469463 GGATACCT 469456 Score = 91.5 bits (100), Expect = 3e-13 Identities = 83/105 (79%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 82707 CCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCC 82766 ||||| || ||||| || || || || |||||||||||||| || ||| || |||||| Sbjct 468288 CCTTCTTTGTCTTGGATTTTCGCCTTGACATTTTCAATCGTGTCGGAAGGCTCCACTTCC 468229 Query 82767 AAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 ||||| || ||||| || |||| || || ||||| ||||||||| Sbjct 468228 AAAGTGATAGTCTTTCCAGTCAGGGTTTTAACAAAGATCTGCATT 468184 >seq512 Length=3718170 Score = 91.5 bits (100), Expect = 3e-13 Identities = 91/118 (77%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 143953 AAGATGAGTGGACTACTTGGaaaaaaaTACCCGATCCAGTCTTGCATATAGAACTTAGGA 144012 ||||||||||| | ||||||| | | | || || ||| ||||||| |||||||| | Sbjct 878103 AAGATGAGTGGGATGTTTGGAAAGATAGAGGTGACCCTGTCCTGCATATTGAACTTAGAA 878162 Query 144013 GATGGGCTGATGTTTTTATTATAGCGCCCTTAACAGCAAATACGTTAGCAAAAATAGC 144070 ||||||||||| ||||||||||||| |||||| || || | | |||||||| || Sbjct 878163 GATGGGCTGATATTTTTATTATAGCACCCTTAGATGCCAACAGCCTTGCAAAAATTGC 878220 >seq16310 Length=633 Score = 87.8 bits (96), Expect = 4e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||| | | ||||| || || || |||||||| ||||| || || ||||| ||||| Sbjct 424 CCTCCCCGTAGACGCAATACCAAATGAAGAGTAGACTCTTTTTGGATGTTATAGTCAGAC 483 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | |||||||||||||| ||||||||||| || || | || ||||| || || Sbjct 484 AGCGTACGCCCGTCTTCTAGTTGCTTTCCAGCAAAAATAAGACGCTGCTGATCGGGTGGG 543 Query 82704 ATTCCT 82709 || ||| Sbjct 544 ATACCT 549 >seq1952 Length=5232 Score = 87.8 bits (96), Expect = 4e-12 Identities = 167/246 (68%), Gaps = 0/246 (0%) Strand=Plus/Plus Query 198396 AGAATGTACTGGGCTAAAAAGATACTTGAATGGACAAGAACACCGGAAGACGCTTTGAGT 198455 |||||||||||||| ||||| || | |||||||| || || ||||| ||| | || Sbjct 313 AGAATGTACTGGGCCAAAAAAATTTTGGAATGGACGGAGACGCCCGAAGAAGCTCTAAGA 372 Query 198456 TATAGTATCTATCTAAACAATAAGTACGAACTAGACGGCACGGATCCTAACGGATACGTA 198515 | ||| ||||| ||| ||| ||| |||| || | || |||| || || || Sbjct 373 CTTGCTATATATCTGAACGATAGATACAGTTTAGATGGAAGAGACCCTAGTGGTTATGTT 432 Query 198516 GGTTGTATGTGGTCTATTTGCGGATTACATGATCGAGCGTGGAAAGAAAGACCTATATTT 198575 || ||||||||||| || || || | ||||| | ||||| || || | | || Sbjct 433 GGCTGTATGTGGTCCATCTGTGGTATTCATGACATGGGCTGGAAGCAACGAGATGTTTTC 492 Query 198576 GGGAAGATAAGATATATGAATTATGAGGGTTCTAAGAAAAAATTTGATGTTGCTGCATTT 198635 || ||||| | || ||||| || | || | | | ||||||||||||| |||||| Sbjct 493 GGAAAGATTCGCTACATGAACTACAAAGGCTGTCAACGCAAATTTGATGTTGTGGCATTT 552 Query 198636 ATACAA 198641 | ||| Sbjct 553 GTTCAA 558 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981464893183539