Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20magna_20[genbank_20GCA_5F001632505.1_202016-04-26] 28,801 sequences; 129,543,483 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq1253 102 8e-17 seq2244 89.7 5e-13 seq2866 82.4 7e-11 >seq1253 Length=553177 Score = 102 bits (112), Expect = 8e-17 Identities = 145/199 (73%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || |||||||| || || || |||||| || || ||| | || || | |||||| || Sbjct 468756 GTCGACTCTTTTTGAATGTTATAATCGGACAAAGTACGACCA-TCTTCCAACTGCTTTCC 468698 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTG-CT 133581 || | ||||| |||||||| || || || |||||||||||||| ||| ||||| || Sbjct 468697 GGCAAAGATGAGACGCTGCTGATCTGGGGGAATGCCTTCCTTGTC-TTGAATTTTTGCCT 468639 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | || | || || | ||||| || || | ||| | ||||| ||||| | || Sbjct 468638 TGACATTTTCGATGGTATCCGATGGCTCAACCTCAAGGGTAATAGTTTTCCCGGTTAAAG 468579 Query 133642 TTTTTACGAAAATCTGCAT 133660 |||| ||||| |||||||| Sbjct 468578 TTTTCACGAAGATCTGCAT 468560 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/207 (71%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 ||||| | || || || ||||| || ||||||||| || || | | | ||||| || Sbjct 468162 AAATGGAGAGTTGATTCCTTCTGGATGTTGTAATCGGACAAAGTACGGCCA-TCCTCAAG 468104 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 ||||||||| || | || | || ||||| || || || || |||||||| || || Sbjct 468103 CTGCTTGCCAGCAAAGATCAAACGTTGCTGATCAGGTGGAATACCTTCCTTATCTTGAAT 468044 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| ||| | | ||||| ||||| | ||||| || || | |||| ||||||||| Sbjct 468043 CTTGGCCTTAACATTCTCAATAGTGTCAGAAGGCTCAACCTCAAGAGTGATGGTTTTGCC 467984 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660 |||| || || || || |||||||| Sbjct 467983 AGTCAATGTCTTGACAAAGATCTGCAT 467957 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/207 (71%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 ||||| | ||| || ||||| || || || || || | ||| ||| | ||||| || Sbjct 470411 AAATGAAGGGTAGATTCTTTTTGAATGTTATAGTCTGAAAGCGTACGACCA-TCCTCAAG 470353 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 ||||||||| ||| | || || || |||||||||||||| || |||||||| || ||| Sbjct 470352 CTGCTTGCCGGCGAAGATCAGACGTTGCTGGTCGGGAGGAATACCTTCCTTATCTTGGAT 470293 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 || ||| | | || | ||||| | || || || |||| |||| ||||| || Sbjct 470292 TTTAGCCTTAACATTTTCGATTGTGTCTGAAGGTTCAACTTCGAGCGTGATAGTTTTCCC 470233 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660 |||| || || || || |||||||| Sbjct 470232 AGTCAACGTCTTGACAAAGATCTGCAT 470206 >seq2244 Length=477090 Score = 89.7 bits (98), Expect = 5e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 148851 TCATCCGGGGCGCTGTACTCTACGATCTCGGCGCACAGATTGCTGCATTTGATCACGCCC 148910 ||||| || | ||||||||| || ||||| | ||||| |||||||||||||||| |||| Sbjct 403942 TCATCTGGAGAGCTGTACTCAACAATCTCCGTGCACAAATTGCTGCATTTGATCGTGCCC 404001 Query 148911 ACGTTCTTTTGATTGCTCTTGCTGTTGCACGCGTCCTTGTACAGCATGTACGGTCCGCCA 148970 | |||| ||||| |||| ||| || || || || || || |||||||| || Sbjct 404002 AAATTCTGCTGATTTGATTTGCGGTTACATGCATCTTTATATAGGATGTACGGAGTTCCC 404061 Query 148971 GTTTCCACCTGCGTTTC 148987 ||||| | ||| | ||| Sbjct 404062 GTTTCAATCTGGGATTC 404078 >seq2866 Length=178446 Score = 82.4 bits (90), Expect = 7e-11 Identities = 132/190 (69%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 133471 CTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCCGCGTAAA 133530 ||||||| || |||||||| | ||| ||| || ||||| || || || ||| Sbjct 176658 CTTTCTGAATGTTGTAATCAGATAAAGTGCGTCCGTCTTCCAGCTGTTTACCAGCAAAAA 176717 Query 133531 TGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGCTGCT 133590 | | || |||||||||||||| || ||||||||||| ||| || ||| | | | Sbjct 176718 TCAAACGTTGCTGGTCGGGAGGAATACCTTCCTTGTCTTGGATTTTCGCCTTAACATTTT 176777 Query 133591 CAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTTACGA 133650 | | || || | ||||| || || | ||||| ||| || || || | || || |||| Sbjct 176778 CGATGGTATCAGAAGGCTCAACCTCAAGGGTGATGGTCTTACCCGTTAATGTCTTAACGA 176837 Query 133651 AAATCTGCAT 133660 |||||||||| Sbjct 176838 AAATCTGCAT 176847 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483246762469240