Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20magna_20[genbank_20GCA_5F001632505.1_202016-04-26] 28,801 sequences; 129,543,483 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq626 123 6e-23 seq2244 107 5e-18 seq1005 105 2e-17 seq687 86.0 1e-11 >seq626 Length=1369339 Score = 123 bits (136), Expect = 6e-23 Identities = 173/243 (71%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 279854 CGTTCTATTCCTCATTTAATGGATGGTTTGAAACCTTCACAGCGTAAGATTATATTCAGT 279913 ||||| |||||| |||||||||||||| ||||| || || ||| || | |||| | Sbjct 256112 CGTTCGATTCCTTCATTAATGGATGGTTTTAAACCCGGCCAACGCAAGGTTCTCTTCACT 256053 Query 279914 TGTTTCAAAAGAAAATTGGTAAAGGAAATTCGTGTTGCTCAGTTAGCAGGTTATGTTTCA 279973 || |||| ||||| ||| ||||| ||||| |||||||| |||| || | Sbjct 256052 TGCATCAAGAGAAATGACAAAAAAGAAATCAAGGTTGCCCAGTTAGCTGGTTCAGTGGCG 255993 Query 279974 GAACATGCAGGTTATCATCACGGTGAAGCGTCTCTTCAAGGTGCTATTGTAGGTCTTGCC 280033 ||||| ||| ||| |||||||||||||| ||| | || | || ||||| | || Sbjct 255992 GAACACTCAGCTTACCATCACGGTGAAGCATCTTTGATGGGAACAATCATAGGTTTAGCT 255933 Query 280034 CAAGATTTTATGGCTTCAAACAACTTAAATCTGCTTTCACCAAATGGTCAATTTGGTTCT 280093 |||||||| ||| || |||||| ||||| || | || || ||||| |||||| || Sbjct 255932 CAAGATTTCGTGGGATCCAACAACATAAATTTGTTGCTTCCCAACGGTCAGTTTGGTACT 255873 Query 280094 CGT 280096 ||| Sbjct 255872 CGT 255870 >seq2244 Length=477090 Score = 107 bits (118), Expect = 5e-18 Identities = 154/217 (71%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 110757 TTTGCTATCTATCTCGAACCTTGGCATTCAGATATATTTGAATTCTTAGAACTTCGTAAA 110816 ||||| || || || ||||| |||||||| ||| |||||||||| | || || || Sbjct 404466 TTTGCAATTTACCTAGAACCATGGCATTCGGATGTATTTGAATTTCTTGATCTAAAAAAG 404407 Query 110817 AATCAAGGATTTGAAGAACAAAGAGCACGTGATTTATTTTATGCAATGTGGATTTCAGAT 110876 ||| ||| ||||| | | |||||||| || ||||| || | |||||| | ||| Sbjct 404406 AATACCGGAAAAGAAGAGAACCGTGCACGTGACTTGTTTTACGCTCTTTGGATTCCTGAT 404347 Query 110877 TTATTCATGAAACGTGTTCAAGAAAATGGCATGTGGTCTCTTATGTGTCCTCATCGTTCT 110936 | |||||| | || ||| || | | || |||||||||||||||||| || | | Sbjct 404346 CTTTTCATGCAGCGCGTTGAATCAGACGGAGAGTGGTCTCTTATGTGTCCGAATGAATGT 404287 Query 110937 CCTGGTCTATCTGATGTATATGGAAAAGAGTTTGAAG 110973 || ||| || | |||| | ||| |||||||||||| Sbjct 404286 CCGGGTTTAGCCGATGCTTGGGGAGAAGAGTTTGAAG 404250 >seq1005 Length=1646370 Score = 105 bits (116), Expect = 2e-17 Identities = 102/131 (78%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 131857 AAGACTTGTAGCTTTTGCTTGTGTTGAAGGTATATTCTTTTCAGGTGCTTTCTGTGCTAT 131916 |||| |||||||||||||| ||| ||||| ||||| || || ||| | || ||| || Sbjct 377657 AAGAATTGTAGCTTTTGCTGCTGTGGAAGGCATATTTTTCTCTGGTTCCTTTGCTGCAAT 377598 Query 131917 CTTTTGGCTTAAGAAGCGTGGATTGATGCCTGGACTCTCATTGTCCAATCAATTCATCTC 131976 ||||||||||| ||||| || |||||||| ||||| |||| || || || | || || Sbjct 377597 ATTTTGGCTTAAAAAGCGAGGTTTGATGCCAGGACTGACATTCTCGAACGAACTGATTTC 377538 Query 131977 GAGAGATGAAG 131987 |||||||||| Sbjct 377537 TAGAGATGAAG 377527 >seq687 Length=2295375 Score = 86.0 bits (94), Expect = 1e-11 Identities = 121/166 (73%), Gaps = 8/166 (5%) Strand=Plus/Plus Query 305324 GATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAAA 305383 |||| |||| | |||||| | ||||| | |||| |||||||||||||||| ||| Sbjct 1941247 GATTTGGTTGTCTTCAATCGCCAACCTACGTTGCACAAAATGTCTATGATGGGGCATCGT 1941306 Query 305384 GTCAAAGT-ATTATCTGGATTGACATTTCGATTAAATGTAAGTGCTTGTA---CGCCTTA 305439 || ||||| || |||| | ||| ||| | | ||| | || ||||| | || || Sbjct 1941307 GTAAAAGTGCTTCCCTGG-TCGACGTTTAGGATGAATCTTAG---TTGTACATCTCCCTA 1941362 Query 305440 TAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCTCAA 305485 ||||| |||||||| || || ||||||||| ||||||| || ||| Sbjct 1941363 CAATGCTGATTTTGACGGTGACGAAATGAATTTGCATGTCCCCCAA 1941408 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186374850870761