Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20magna_20[genbank_20GCA_5F001632505.1_202016-04-26] 28,801 sequences; 129,543,483 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq1253 125 5e-24 seq2866 107 1e-18 seq16310 89.7 3e-13 >seq1253 Length=553177 Score = 125 bits (138), Expect = 5e-24 Identities = 160/218 (73%), Gaps = 2/218 (1%) Strand=Plus/Minus Query 33534 ACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTC 33593 ||||| || || || ||||| ||||||||| ||||| |||||||| | || || | Sbjct 468775 ACGTAGAACTAAGTGAAGAGTCGACTCTTTTTGAATGTTATAATCGGACAAAGTACGACC 468716 Query 33594 GTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTT 33653 || ||||| || ||||||||||| || | ||||||||||||| | || | ||||| || Sbjct 468715 ATCTTCCAACTGCTTTCCGGCAAAGATGAGACGCTGCTGATCTGGGGGAATGCCTTCCTT 468656 Query 33654 GTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGA 33712 ||| |||||| || | |||| || | ||| || || || || |||| || | Sbjct 468655 GTCTTGAATTTT-TGCCTTGACATTTTCGATGGTATCCGATGGCTCAACCTCAAGGGTAA 468597 Query 33713 TCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | ||||| || ||||| ||||| || |||||||||||| Sbjct 468596 TAGTTTTCCCGGTTAAAGTTTTCACGAAGATCTGCATA 468559 Score = 96.9 bits (106), Expect = 2e-15 Identities = 161/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||||| | || | ||||| ||| | ||| ||| || || |||||||| || || Sbjct 470205 ACCACCTCGGAGTCGAAGCACCAGATGCAAAGTAGACTCCTTCTGAATGTTGTAGTCAGA 470146 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | || || | || ||||| || ||||||||||| || | ||||||||||||| | || Sbjct 470145 CAACGTACGCCCATCTTCCAACTGCTTTCCGGCAAAGATGAGACGCTGCTGATCTGGTGG 470086 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | ||| || ||||| ||| || | || || | || | ||| || || ||| | Sbjct 470085 GATACCCTCCTTGTCCTGAATCTT-AGCTTTTACGTTTTCTATGGTATCCGATGGTTCAA 470027 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || | || || ||||| || || || ||||| || ||||| |||||| Sbjct 470026 CTTCGAGAGTAATGGTTTTCCCCGTCAAGGTTTTCACGAAGATTTGCATA 469977 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 || ||||| | || | |||||||| ||||| || || || |||||||||||||| Sbjct 468183 CCTCCTCTGAGGCGCAGAACCAAATGGAGAGTTGATTCCTTCTGGATGTTGTAATCGGAC 468124 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 | || || | || || | || || || ||||| |||||||| |||||||| | || Sbjct 468123 AAAGTACGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAAACGTTGCTGATCAGGTGGA 468064 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | |||||| || || ||| || | | ||||| || | ||||| | || || Sbjct 468063 ATACCTTCCTTATCTTGAATCTT-GGCCTTAACATTCTCAATAGTGTCAGAAGGCTCAAC 468005 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 |||| ||||| ||||| || || || || || |||||||||||||| Sbjct 468004 CTCAAGAGTGATGGTTTTGCCAGTCAATGTCTTGACAAAGATCTGCAT 467957 Score = 93.3 bits (102), Expect = 3e-14 Identities = 153/218 (70%), Gaps = 2/218 (1%) Strand=Plus/Minus Query 33534 ACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTC 33593 |||||| || ||||| || || |||||||| ||||| || || || || || || | Sbjct 470421 ACGTAAAACTAAATGAAGGGTAGATTCTTTTTGAATGTTATAGTCTGAAAGCGTACGACC 470362 Query 33594 GTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTT 33653 || || | || || ||||| || |||| ||| ||||| || | || | |||||| || Sbjct 470361 ATCCTCAAGCTGCTTGCCGGCGAAGATCAGACGTTGCTGGTCGGGAGGAATACCTTCCTT 470302 Query 33654 GTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGA 33712 || ||||| || ||||| || | ||||| | ||| || || | ||||| Sbjct 470301 ATCTTGGATTTTAGCCTT-AACATTTTCGATTGTGTCTGAAGGTTCAACTTCGAGCGTGA 470243 Query 33713 TCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | ||||| || || ||||| || ||||||||||||||| Sbjct 470242 TAGTTTTCCCAGTCAACGTCTTGACAAAGATCTGCATA 470205 Score = 82.4 bits (90), Expect = 5e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | || ||| | |||| ||| ||||| ||| ||||| ||||||||||| || Sbjct 469183 CCACCGCGCAGACGAAGAACCAGATGAAGAGTCGACTCCTTTTGGATGTTGTAATCCGAT 469124 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATC 33635 | || || | || |||| |||||| || ||||| |||||||| |||||||| Sbjct 469123 AAGGTACGACCATCCTCCAGTTGTTTACCAGCAAAGATCAAACGTTGCTGATC 469071 >seq2866 Length=178446 Score = 107 bits (118), Expect = 1e-18 Identities = 140/191 (73%), Gaps = 2/191 (1%) Strand=Plus/Plus Query 33560 CTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAA 33619 |||| || ||||||||||| || | |||||| |||| |||| ||||| || ||||||| Sbjct 176658 CTTTCTGAATGTTGTAATCAGATAAAGTGCGTCCGTCTTCCAGCTGTTTACCAGCAAAAA 176717 Query 33620 TCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAG 33679 ||||||| ||||| || | || | |||||| ||||| |||||| | | ||||| Sbjct 176718 TCAAACGTTGCTGGTCGGGAGGAATACCTTCCTTGTCTTGGATTTTC-GCCTTAACATTT 176776 Query 33680 TC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACA 33738 || | ||| || | || || |||| ||||| || ||||| ||||| || || || Sbjct 176777 TCGATGGTATCAGAAGGCTCAACCTCAAGGGTGATGGTCTTACCCGTTAATGTCTTAACG 176836 Query 33739 AAGATCTGCAT 33749 || |||||||| Sbjct 176837 AAAATCTGCAT 176847 >seq16310 Length=633 Score = 89.7 bits (98), Expect = 3e-13 Identities = 88/114 (77%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||| || | || ||| ||||||||||| | || |||||| || |||||||| ||||| Sbjct 21 ACCTCCACGCAGACGCAACACCAAATGCAACGTAGACTCTTTCTGAATGTTGTAGTCGGA 80 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATC 33635 | || || | || |||||||| ||||| |||||||||| ||||||||| || Sbjct 81 CAACGTACGCCCATCTTCCAATTGCTTTCCAGCAAAAATCAGACGCTGCTGGTC 134 Score = 86.0 bits (94), Expect = 4e-12 Identities = 88/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 33534 ACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTC 33593 ||| || |||||||| ||||| ||||||||| ||||| || || || || || || | Sbjct 435 ACGCAATACCAAATGAAGAGTAGACTCTTTTTGGATGTTATAGTCAGACAGCGTACGCCC 494 Query 33594 GTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCT 33648 ||| || | ||| ||||| |||||||| | |||||||||||| | || | |||| Sbjct 495 GTCTTCTAGTTGCTTTCCAGCAAAAATAAGACGCTGCTGATCGGGTGGGATACCT 549 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328588620889920