Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20magna_20[genbank_20GCA_5F001632505.1_202016-04-26] 28,801 sequences; 129,543,483 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq1253 109 1e-18 >seq1253 Length=553177 Score = 109 bits (120), Expect = 1e-18 Identities = 141/195 (72%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| | || || ||||| || || | || || || || || || ||||| Sbjct 468575 AAAACTTTAACCGGGAAAACTATTACCCTTGAGGTTGAGCCATCGGATACCATCGAAAAT 468634 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||| |||||||| || ||||| ||| || || || | || ||||| Sbjct 468635 GTCAAGGCAAAAATTCAAGACAAGGAAGGCATTCCCCCAGATCAGCAGCGTCTCATCTTT 468694 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||||||||||||||||||||| | |||||| ||||||| ||| | || |||||||| Sbjct 468695 GCCGGAAAGCAGTTGGAAGATGGTCGTACTTTGTCCGATTATAACATTCAAAAAGAGTCG 468754 Query 206365 ACTCTTCACCTTGTT 206379 ||||||||| | ||| Sbjct 468755 ACTCTTCACTTAGTT 468769 Score = 105 bits (116), Expect = 2e-17 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||| ||| | || || ||||| ||||| | ||||| ||| ||| ||| Sbjct 470209 CAGATCTTTGTCAAGACGTTGACTGGGAAAACTATCACGCTCGAAGTTGAACCTTCAGAC 470268 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 ||| ||||| || ||| || || ||||| || ||||| ||| || ||| ||| Sbjct 470269 ACAATCGAAAATGTTAAGGCTAAAATCCAAGATAAGGAAGGTATTCCTCCCGACCAGCAA 470328 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || ||||||||||| |||||| | || ||||| | || | | || || ||| | Sbjct 470329 CGTCTGATCTTCGCCGGCAAGCAGCTTGAGGATGGTCGTACGCTTTCAGACTATAACATT 470388 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 || ||||| ||||| ||||| | ||||| | ||||| Sbjct 470389 CAAAAAGAATCTACCCTTCATTTAGTTTTACGTCTTCG 470426 Score = 100 bits (110), Expect = 7e-16 Identities = 148/209 (71%), Gaps = 3/209 (1%) Strand=Plus/Plus Query 206164 AAAATGTACCAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAA 206223 |||||| ||||| ||| ||| || | || || ||||| |||||| | || || || Sbjct 467954 AAAATG---CAGATCTTTGTCAAGACATTGACTGGCAAAACCATCACTCTTGAGGTTGAG 468010 Query 206224 AGTTCTGACACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCG 206283 ||||||||| | || || ||| ||||||||||| || ||||| ||| || Sbjct 468011 CCTTCTGACACTATTGAGAATGTTAAGGCCAAGATTCAAGATAAGGAAGGTATTCCACCT 468070 Query 206284 GACGCTCAAAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGAT 206343 || ||| | | ||||| || || |||||| | || ||||| | |||||| ||||| Sbjct 468071 GATCAGCAACGTTTGATCTTTGCTGGCAAGCAGCTTGAGGATGGCCGTACTTTGTCCGAT 468130 Query 206344 TACAACGTCCAGAAAGAGTCTACTCTTCA 206372 |||||| ||||||| || || ||||| || Sbjct 468131 TACAACATCCAGAAGGAATCAACTCTCCA 468159 Score = 93.3 bits (102), Expect = 1e-13 Identities = 81/101 (80%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 206290 CAAAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAAC 206349 ||| | ||||| ||||| || |||||||||||||||||| | || ||| |||| |||||| Sbjct 468452 CAACGTCTTATTTTCGCTGGTAAGCAGTTGGAAGATGGACGTACGTTGTCCGACTACAAC 468511 Query 206350 GTCCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 |||||||||| || || |||||| | ||| | | ||||| Sbjct 468512 ATCCAGAAAGAATCAACCCTTCACTTGGTTCTTCGTCTTCG 468552 Score = 91.5 bits (100), Expect = 3e-13 Identities = 83/105 (79%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811 ||||| | | ||| | |||||| || || |||||||||| || ||||| | ||| || Sbjct 468552 CGAAGACGAAGAACCAAGTGAAGGGTTGATTCTTTCTGGATGTTGTAGTCGGACAACGTA 468493 Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 | ||||||||||| |||||| || ||||| ||||| ||||||||| Sbjct 468492 CGTCCATCTTCCAACTGCTTACCAGCGAAAATAAGACGTTGTTGA 468448 Score = 89.7 bits (98), Expect = 1e-12 Identities = 144/207 (70%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| | || || ||||| || ||| | ||||| ||| || || || | ||| Sbjct 469993 AAAACCTTGACGGGGAAAACCATTACTCTCGAAGTTGAACCATCGGATACCATAGAAAAC 470052 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 ||||| |||||||| || || || || || || || || | || ||||| Sbjct 470053 GTAAAAGCTAAGATTCAGGACAAGGAGGGTATCCCACCAGATCAGCAGCGTCTCATCTTT 470112 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||||||||||||||||||||| | || ||| | || |||||| | ||||| |||||| Sbjct 470113 GCCGGAAAGCAGTTGGAAGATGGGCGTACGTTGTCTGACTACAACATTCAGAAGGAGTCT 470172 Query 206365 ACTCTTCACCTTGTTTTGAGACTTCGA 206391 ||| | || || || | |||| ||| Sbjct 470173 ACTTTGCATCTGGTGCTTCGACTCCGA 470199 Score = 87.8 bits (96), Expect = 4e-12 Identities = 83/106 (78%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 204751 TCGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGT 204810 |||||| | | ||| | |||||| || ||||||||||| | ||||| || | ||| || Sbjct 469971 TCGAAGACGTAGAACCAAGTGAAGGGTGGACTCTTTCTGAATGTTATAATCCGACAACGT 469912 Query 204811 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 | |||||| || |||||||| || ||||||||||| ||||| ||| Sbjct 469911 ACGTCCATCCTCTAGCTGCTTGCCAGCGAAGATAAGACGTTGCTGA 469866 Score = 84.2 bits (92), Expect = 5e-11 Identities = 75/94 (80%), Gaps = 0/94 (0%) Strand=Plus/Minus Query 204763 AACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTC 204822 ||| | ||||||||| |||||||| || | ||||| || | |||||| | |||||||| Sbjct 468769 AACTAAGTGAAGAGTCGACTCTTTTTGAATGTTATAATCGGACAAAGTACGACCATCTTC 468710 Query 204823 CAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 || |||||||||||| ||||| || || || ||| Sbjct 468709 CAACTGCTTTCCGGCAAAGATGAGACGCTGCTGA 468676 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181384692982721