Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20magna_20[genbank_20GCA_5F001632505.1_202016-04-26] 28,801 sequences; 129,543,483 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq1253 116 4e-21 >seq1253 Length=553177 Score = 116 bits (128), Expect = 4e-21 Identities = 142/194 (73%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||||||||||||||| || ||| || ||||| |||||| | ||| || |||| | Sbjct 468753 GACTCTTTTTGAATGTTATAATCGGACAAAGTACGACCATCTTCCAACTGCTTTCCGGCA 468694 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| |||||||| |||||||| || |||||||| || || ||||||| || | Sbjct 468693 AAGATGAGACGCTGCTGATCTGGGGGAATGCCTTCCTTGTCTTGAATTTTTGCCTTGACA 468634 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | ||| | ||||| | ||||| || || | || | ||||| || || | |||||| Sbjct 468633 TTTTCGATGGTATCCGATGGCTCAACCTCAAGGGTAATAGTTTTCCCGGTTAAAGTTTTC 468574 Query 132110 ATGAAAATCTGCAT 132123 | ||| |||||||| Sbjct 468573 ACGAAGATCTGCAT 468560 Score = 102 bits (112), Expect = 8e-17 Identities = 139/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| || |||||||||||||| || |||||| |||||| | ||| || |||| | Sbjct 470171 GACTCCTTCTGAATGTTGTAGTCAGACAACGTACGCCCATCTTCCAACTGCTTTCCGGCA 470112 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| |||||||| |||||||| || || || || || || ||| || ||| | Sbjct 470111 AAGATGAGACGCTGCTGATCTGGTGGGATACCCTCCTTGTCCTGAATCTTAGCTTTTACG 470052 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | ||| | ||||| | || || ||||||| || | ||||| || |||| ||||| Sbjct 470051 TTTTCTATGGTATCCGATGGTTCAACTTCGAGAGTAATGGTTTTCCCCGTCAAGGTTTTC 469992 Query 132110 ATGAAAATCTGCAT 132123 | ||| || ||||| Sbjct 469991 ACGAAGATTTGCAT 469978 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 || ||||| ||||| | | | || |||||||||||||| ||||| | ||||| | Sbjct 470420 CGTAAAACTAAATGAAGGGTAGATTCTTTTTGAATGTTATAGTCTGAAAGCGTACGACCA 470361 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 || || ||||| || |||| |||| ||||| || || || ||||| || ||||| ||| Sbjct 470360 TCCTCAAGCTGCTTGCCGGCGAAGATCAGACGTTGCTGGTCGGGAGGAATACCTTCCTTA 470301 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || ||||| || | | ||| | || || | || || ||||||| ||| | Sbjct 470300 TCTTGGATTTTAGCCTTAACATTTTCGATTGTGTCTGAAGGTTCAACTTCGAGCGTGATA 470241 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||| ||||||| || || | || |||||||| Sbjct 470240 GTTTTCCCAGTCAACGTCTTGACAAAGATCTGCAT 470206 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476439614010360