Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20magna_20[genbank_20GCA_5F001632505.1_202016-04-26] 28,801 sequences; 129,543,483 total letters Query= NC_026141.2 Length=4988 Score E Sequences producing significant alignments: (Bits) Value seq3164 102 3e-18 seq2864 102 3e-18 seq872 102 3e-18 seq4838 98.7 3e-17 seq1253 98.7 3e-17 seq27037 95.1 4e-16 seq14865 89.7 2e-14 seq5222 89.7 2e-14 seq1377 87.8 6e-14 seq820 82.4 2e-12 >seq3164 Length=181219 Score = 102 bits (112), Expect = 3e-18 Identities = 68/76 (89%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 2765 TATGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTC 2824 ||| || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 148359 TATCGCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTC 148300 Query 2825 AACCCCGGGCTTCAGC 2840 | |||||| ||| || Sbjct 148299 GATCCCGGGTTTCGGC 148284 >seq2864 Length=582589 Score = 102 bits (112), Expect = 3e-18 Identities = 68/76 (89%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 2765 TATGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTC 2824 ||| || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 108438 TATCGCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTC 108497 Query 2825 AACCCCGGGCTTCAGC 2840 | |||||| ||| || Sbjct 108498 GATCCCGGGTTTCGGC 108513 >seq872 Length=416603 Score = 102 bits (112), Expect = 3e-18 Identities = 68/76 (89%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 2765 TATGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTC 2824 ||| || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 81738 TATCGCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTC 81797 Query 2825 AACCCCGGGCTTCAGC 2840 | |||||| ||| || Sbjct 81798 GATCCCGGGTTTCGGC 81813 >seq4838 Length=561 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 2 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 61 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 62 CCGGGTTTCGGC 73 >seq1253 Length=553177 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 376676 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 376735 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 376736 CCGGGTTTCGGC 376747 >seq27037 Length=487 Score = 95.1 bits (104), Expect = 4e-16 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||| ||||| | | Sbjct 187 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCCGGTTCGATC 246 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 247 CCGGGTTTCGGC 258 >seq14865 Length=453 Score = 89.7 bits (98), Expect = 2e-14 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||| || |||||||| | | Sbjct 217 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAACGTTCCTGGTTCGATC 158 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 157 CCGGGTTTCGGC 146 >seq5222 Length=643 Score = 89.7 bits (98), Expect = 2e-14 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||| ||||||||| ||||||||||| | | Sbjct 77 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGTAGATCTAAAAGTCCCTGGTTCGATC 136 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 137 CCGGGTTTCGGC 148 >seq1377 Length=2535 Score = 87.8 bits (96), Expect = 6e-14 Identities = 65/76 (86%), Gaps = 4/76 (5%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGG----TCCCTGGTTC 2824 || ||| |||||||||||||||||| |||||||||||||||||||| |||| ||||| Sbjct 2430 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCAATCCCGGGTTC 2371 Query 2825 AACCCCGGGCTTCAGC 2840 || |||||| ||| || Sbjct 2370 AATCCCGGGTTTCTGC 2355 >seq820 Length=49235 Score = 82.4 bits (90), Expect = 2e-12 Identities = 57/65 (88%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||| | ||||||| |||||||||||||||||||||| | | Sbjct 27752 GCCGAAATAGCTCAGTTGGGAGAACGTTAGACTAAAGATCTAAAGGTCCCTGGTTCGATC 27693 Query 2829 CCGGG 2833 || || Sbjct 27692 CCAGG 27688 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15844607202645