Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20magna_20[genbank_20GCA_5F001632505.1_202016-04-26] 28,801 sequences; 129,543,483 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq17009 95.1 2e-13 seq2580 95.1 2e-13 >seq17009 Length=896 Score = 95.1 bits (104), Expect = 2e-13 Identities = 164/234 (70%), Gaps = 6/234 (3%) Strand=Plus/Plus Query 724907 CTTTATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAA 724966 || ||||||||| ||| | |||||||| || || || || ||| |||||||| | Sbjct 494 CTATATCTACAAAGTGTTGAAGCAGGTCCATCCT-GA--CGCTGGCATCTCCTCCAA--A 548 Query 724967 GTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGC 725026 | ||||| ||||||||||| || ||||||||||| | || ||||| | || | Sbjct 549 G-CCATGACGATCATGAACAGCTTCGTCAACGACATTTTTGAACGCATTGCTGGTGAATC 607 Query 725027 CGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGC 725086 ||| || || | || ||||||||| || ||| | ||||| |||||||| || Sbjct 608 TTCTCGTCTTGCTCACTACAACAAGCGATCAACTATCACAAGTCGCGAAATCCAGACGGC 667 Query 725087 CGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 || ||||| || ||| || ||| |||| | |||||||| || || ||||| Sbjct 668 TGTCCGCCTTCTCCTGCCTGGTGAATTGGCAAAACACGCCGTGTCTGAAGGCAC 721 >seq2580 Length=1487765 Score = 95.1 bits (104), Expect = 2e-13 Identities = 158/219 (72%), Gaps = 11/219 (5%) Strand=Plus/Plus Query 1600520 AAGGGCGTGCCGTCGCCCACATAGCCCTCGCG-GCAGGCCACCTTGCCCAGGAGGGCCTC 1600578 || || ||| ||||||| | | ||||| | |||| | || |||||| | ||| || Sbjct 175817 AATGGAGTGGCGTCGCCTATTTCGCCCTTGTTTGCAGAC-ACTTTGCCCTGAAGGCATTC 175875 Query 1600579 CATCATCTTGCCCATGGTCATGCGCGACGGGATGGCGTGCGGGTTGATCACAATGTCGGG 1600638 |||| | ||| ||||||||||| ||||||||||||||||||||||| | |||||||| Sbjct 175876 GATCAAATGGCCGATGGTCATGCGGGACGGGATGGCGTGCGGGTTGATGATGATGTCGGG 175935 Query 1600639 CGTGGCACCGCCGCGAGGCGACCAGGGCATGTCCTCGGTGGAGCGCA--CGCTGCC-CAC 1600695 || || ||| | | || | ||||||||||| | || | | | | || ||| Sbjct 175936 AGTTAATCCTTCGC-AAGTGA--AAGGCATGTCCTC--TTGACGGTATTGGATACCGCAC 175990 Query 1600696 GGTGCCCTTTTGGCCGTGGCGCGACGACAGTTTGTCGCC 1600734 |||||||| || ||||| ||||| | | ||||||||| Sbjct 175991 -GTGCCCTTCTGTCCGTGACGCGAGGCGAATTTGTCGCC 176028 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7175033290613762