Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20magna_20[genbank_20GCA_5F001632505.1_202016-04-26] 28,801 sequences; 129,543,483 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq2866 107 2e-18 seq1253 104 2e-17 seq16310 96.9 3e-15 seq1952 87.8 2e-12 >seq2866 Length=178446 Score = 107 bits (118), Expect = 2e-18 Identities = 142/196 (72%), Gaps = 1/196 (1%) Strand=Plus/Plus Query 35547 CCTTT-TGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 ||||| |||||||||||||| | || || || |||| |||||||| ||||| ||||| Sbjct 176657 CCTTTCTGAATGTTGTAATCAGATAAAGTGCGTCCGTCTTCCAGCTGTTTACCAGCAAAA 176716 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 ||||| || |||||||| | ||||| | |||||||| ||| || ||| | | || Sbjct 176717 ATCAAACGTTGCTGGTCGGGAGGAATACCTTCCTTGTCTTGGATTTTCGCCTTAACATTT 176776 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | | || || | || ||||| | ||||| || |||||||| || || || || Sbjct 176777 TCGATGGTATCAGAAGGCTCAACCTCAAGGGTGATGGTCTTACCCGTTAATGTCTTAACG 176836 Query 35726 AATATCTGCATTCTGT 35741 || ||||||||| ||| Sbjct 176837 AAAATCTGCATTTTGT 176852 >seq1253 Length=553177 Score = 104 bits (114), Expect = 2e-17 Identities = 143/196 (73%), Gaps = 8/196 (4%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 ||| ||||||||||| ||||||| ||| || || | || |||| |||||| || ||||| Sbjct 468751 CTCTTTTTGAATGTTATAATCGGACAAAGTACGACCATCTTCCAACTGCTTTCCGGCAAA 468692 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTG-CTTCAGAG 35663 || | |||||||| || | |||| || ||||||| | ||| ||||| ||| | | Sbjct 468691 GATGAGACGCTGCTGATCTGGGGGAATGCCTTCCTTGT-CTTGAATTTTTGCCTTGACAT 468633 Query 35664 TTGCCACCGTGTCGCTCGAT---TCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTT 35720 || | | || || |||| || ||||| | || || ||||| || || ||||||| Sbjct 468632 TTTCGATGGTATC---CGATGGCTCAACCTCAAGGGTAATAGTTTTCCCGGTTAAAGTTT 468576 Query 35721 TCACAAATATCTGCAT 35736 |||| || |||||||| Sbjct 468575 TCACGAAGATCTGCAT 468560 Score = 100 bits (110), Expect = 3e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 35527 CACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTC 35586 ||||| ||| || ||| |||||| ||||||||||| || | ||| || ||| | || || Sbjct 470187 CACCAGATGCAAAGTAGACTCCTTCTGAATGTTGTAGTCAGACAACGTACGCCCATCTTC 470128 Query 35587 CAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCAT 35646 || |||||| || ||||| || | |||||||| || | || | | |||||||||| Sbjct 470127 CAACTGCTTTCCGGCAAAGATGAGACGCTGCTGATCTGGTGGGATACCCTCCTTGTCCTG 470068 Query 35647 GATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTT 35706 ||||| || | || | | || || | ||| || || | || || ||||| Sbjct 470067 AATCTTAGCTTTTACGTTTTCTATGGTATCCGATGGTTCAACTTCGAGAGTAATGGTTTT 470008 Query 35707 ACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 |||||||| |||||||| || || ||||| Sbjct 470007 CCCCGTCAAGGTTTTCACGAAGATTTGCAT 469978 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 35528 ACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCC 35587 |||||||| | || ||||| || ||||||||||||| ||| || || | || || Sbjct 468165 ACCAAATGGAGAGTTGATTCCTTCTGGATGTTGTAATCGGACAAAGTACGGCCATCCTCA 468106 Query 35588 AGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATG 35647 |||||||| || ||||| ||||| || ||||| || | |||| | ||||| || Sbjct 468105 AGCTGCTTGCCAGCAAAGATCAAACGTTGCTGATCAGGTGGAATACCTTCCTTATCTTGA 468046 Query 35648 ATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTA 35707 ||||| ||| | | | | | ||||| | || ||||| | ||||| ||||| Sbjct 468045 ATCTTGGCCTTAACATTCTCAATAGTGTCAGAAGGCTCAACCTCAAGAGTGATGGTTTTG 467986 Query 35708 CCCGTCAAAGTTTTCACAAATATCTGCATTCTG 35740 || ||||| || || ||||| ||||||||| || Sbjct 467985 CCAGTCAATGTCTTGACAAAGATCTGCATTTTG 467953 Score = 89.7 bits (98), Expect = 5e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 35508 TTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGG 35567 |||| ||||| | | || || ||||| | ||| || ||||||||||| || || | Sbjct 470434 TTCCTCCACGAAGACGTAAAACTAAATGAAGGGTAGATTCTTTTTGAATGTTATAGTCTG 470375 Query 35568 CCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAG 35627 | || || | || || |||||||| || || || |||| || |||||||| | || Sbjct 470374 AAAGCGTACGACCATCCTCAAGCTGCTTGCCGGCGAAGATCAGACGTTGCTGGTCGGGAG 470315 Query 35628 GAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCA 35687 ||| | ||||| || ||| || ||| | | || | | ||||| | ||| | Sbjct 470314 GAATACCTTCCTTATCTTGGATTTTAGCCTTAACATTTTCGATTGTGTCTGAAGGTTCAA 470255 Query 35688 CCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 | || | |||||| ||||| || ||||| || || ||||| |||||||| Sbjct 470254 CTTCGAGCGTGATAGTTTTCCCAGTCAACGTCTTGACAAAGATCTGCAT 470206 >seq16310 Length=633 Score = 96.9 bits (106), Expect = 3e-15 Identities = 89/113 (79%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 || ||||| | | |||||||||||| |||||| ||| || ||||||||||| |||| | Sbjct 22 CCTCCACGCAGACGCAACACCAAATGCAACGTAGACTCTTTCTGAATGTTGTAGTCGGAC 81 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTC 35622 || || ||| | || |||| ||||| || ||||| |||| ||||||||||| Sbjct 82 AACGTACGCCCATCTTCCAATTGCTTTCCAGCAAAAATCAGACGCTGCTGGTC 134 >seq1952 Length=5232 Score = 87.8 bits (96), Expect = 2e-12 Identities = 160/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 44190 ATGTATTGGTGCAAGAAGATATTGGAGTGGTCGGAAGATGCGCAAACC-GCGCTCGTTCA 44248 ||||| ||| ||| || || ||||| ||| |||| || || | || || || | Sbjct 316 ATGTACTGGGCCAAAAAAATTTTGGAATGGACGGA-GACGCCCGAAGAAGCTCTAAGACT 374 Query 44249 TGCCATCTATCTGAACGACAAGTACAGTTTGGACGGTCGCGACCCCAACGGGTACGTAGG 44308 ||| || ||||||||||| | |||||||| || || | ||||| | || || || || Sbjct 375 TGCTATATATCTGAACGATAGATACAGTTTAGATGGAAGAGACCCTAGTGGTTATGTTGG 434 Query 44309 ATGTATGTGGTCCATTTGCGGTGTCCACGACAGGGCGTGGCGAGAGCTACCCATCTACGG 44368 |||||||||||||| || ||| | || |||| || ||| | | | | | ||| Sbjct 435 CTGTATGTGGTCCATCTGTGGTATTCATGACATGGGCTGGAAGCAACGAGATGTTTTCGG 494 Query 44369 CAAAGTGCGCTACATGAACTACAACGGTTGCGTCA--GAAAGTTTGATGT 44416 || | ||||||||||||||||| || | |||| | || |||||||| Sbjct 495 AAAGATTCGCTACATGAACTACAAAGGCT--GTCAACGCAAATTTGATGT 542 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450631308669080