Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20magna_20[genbank_20GCA_5F001632505.1_202016-04-26] 28,801 sequences; 129,543,483 total letters Query= NC_026927.1 Length=228143 Score E Sequences producing significant alignments: (Bits) Value seq512 89.7 8e-13 >seq512 Length=3718170 Score = 89.7 bits (98), Expect = 8e-13 Identities = 206/303 (68%), Gaps = 8/303 (3%) Strand=Plus/Minus Query 161105 CACCTCCACTACGGGGATTTGACTGAC--TCCCTGAACATAGTCTCTATCATTAAGGAAG 161162 ||||| || || || || ||||||||| | | || ||||| || ||| |||| Sbjct 2863715 CACCTACATTATGGTGACTTGACTGACAGTTCTTGTC--TAGTCAAGATTATTGCAGAAG 2863658 Query 161163 TAGAACCTGATGAGATCTACAACCTAGGGGCACAGAGTCATGTGAAAGTATCTTTCGAGG 161222 | |||| ||| || ||||| || || || ||||| ||||| ||||| ||||| || Sbjct 2863657 TCAAACCAACTGAAATATACAATCTGGGTGCCCAGAGCCATGTAAAAGTTTCTTTTGATT 2863598 Query 161223 AACCTGAATATACAGCACAGACTGATGCTCTGGGAACCCTAAGAGTATTGGAGGCAGTTC 161282 ||||||||||||| | |||||| ||||||| ||| || | | || ||||| | Sbjct 2863597 TGGCTGAATATACAGCCAATGTTGATGCATTGGGAACTCTACGAATTCTTGATGCAGTCC 2863538 Query 161283 GT-CTCCTAGGTAT-GACAGATAGGGTCCGTATCTACCAGGCATCCACCAGTGAGTTGTA 161340 || || | ||| | || | || | | | ||||||| || || ||| || | || Sbjct 2863537 GTACTTGT-GGTCTGGAGAAATCTGTTAAAT-TCTACCAAGCTTCTACCTCAGAACTCTA 2863480 Query 161341 TGGGTTGGTACAAGAGACACCACAGAAAGAAACAACACCTTTCTACCCACGATCTCCATA 161400 || || |||||| ||| || || || | ||| || || ||||| |||||||||| Sbjct 2863479 CGGAAAAGTGCAAGAGGTACCTCAAAATGAGAAAACTCCATTTTACCCTAGATCTCCATA 2863420 Query 161401 TGG 161403 ||| Sbjct 2863419 TGG 2863417 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 729666816219880