Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20magna_20[genbank_20GCA_5F001632505.1_202016-04-26] 28,801 sequences; 129,543,483 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq1005 230 3e-55 seq2244 134 2e-26 >seq1005 Length=1646370 Score = 230 bits (254), Expect = 3e-55 Identities = 275/373 (74%), Gaps = 3/373 (1%) Strand=Plus/Plus Query 39599 AAATGTTTAAACATTAAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAAT 39658 |||||||| ||||| | ||| || || || || || || || ||||||||| ||| | | Sbjct 377487 AAATGTTTGAACATAACGCATGCAAAATCGCAGTGCAGACCTTCATCTCTAGAAATCAGT 377546 Query 39659 TCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCA 39718 ||||| || ||||| ||||| ||||| | ||| |||||||| ||||||||||| |||||| Sbjct 377547 TCGTTCGAGAATGTCAGTCCTGGCATCAAACCTCGCTTTTTAAGCCAAAATATTGCAGCA 377606 Query 39719 AAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAA 39778 || || ||||| || || |||||||| || || ||||| || |||| ||| || | |||| Sbjct 377607 AAGGAACCAGAGAAAAATATGCCTTCCACAGCAGCAAAAGCTACAATTCTTTCACTGTAA 377666 Query 39779 CTTGTATC---ATTATGTATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGC 39835 || ||| ||| ||||| || ||||| ||||| |||||| ||||||||| Sbjct 377667 GGTGCATCTCTGTTACCAATCCATCTCATGGCCCAGTCAGCCTTCTTCGCAACACAAGGC 377726 Query 39836 ATTGTTTCTATAGCATTAAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCT 39895 ||||| || | ||| || || || | ||||| || ||| || | || || || Sbjct 377727 ATTGTCTCAACAGCGTTGAAAAGTTTCATCCTTTCAGCAGAATCCTTGATGTAGGTTTCA 377786 Query 39896 ATTAACAGACTATACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAA 39955 |||||||| || ||||| ||||| ||||| ||||| || || || || || || || ||| Sbjct 377787 ATTAACAGGCTGTACATCTCTGAGTGGATATTTTCCATGGCTATTTGGAAACCATAGAAA 377846 Query 39956 CATCTTGCTTCAG 39968 || | || |||| Sbjct 377847 CAGCGAGCCTCAG 377859 >seq2244 Length=477090 Score = 134 bits (148), Expect = 2e-26 Identities = 167/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 69501 TTGTGTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATT 69560 |||| || | ||| ||| || || ||||||||| |||| | || || ||||||||||| Sbjct 404238 TTGTATACAAAGC--TTCAAACTCTTCTCCCCAAGCATCGGCTAAACCCGGACATTCATT 404295 Query 69561 TGGACACATCAATGACCACACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAAT 69620 |||||||| | |||||| | | || | ||| || | ||| || ||||| ||||| Sbjct 404296 CGGACACATAAGAGACCACTCTCCGTCTGATTCAACGCGCTGCATGAAAAGATCAGGAAT 404355 Query 69621 CCAAAGAGCTATAAAGAGATCTCTGGTTCTATTTTCTTCATTTCCTGTAttttttttAAG 69680 ||||||||| ||| | || | | | || ||||| ||||| ||||| ||||| || Sbjct 404356 CCAAAGAGCGTAAAACAAGTCACGTGCACGGTTCTCTTCTTTTCCGGTATTCTTTTTTAG 404415 Query 69681 ATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGC 69728 ||| ||||| || | | ||| ||||||||||||||||| || || || Sbjct 404416 ATCAAGAAATTCAAATACATCCGAATGCCATGGTTCTAGGTAAATTGC 404463 Score = 114 bits (126), Expect = 2e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 69744 TTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAAT 69803 ||| || || ||||| || | ||| | ||||||||||| || || | ||||| || | Sbjct 404570 TTTGTTACCACCCTGGTCCACGTAACGTGCAGTGTTATTGTATACGCGTAGCATTGGGAC 404629 Query 69804 AATACCATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACT 69863 | ||| || ||| | ||||||||||| | ||||||||||| | || || || | Sbjct 404630 TAGACCGTTCGATATTCCATTTGTTCCGGCGATATAACTTCCGGTGGCCCGTATGCAATG 404689 Query 69864 AATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTC 69923 || || || || || || || ||| || |||| ||||| | || ||||| || Sbjct 404690 TATGTTGAGGCCAATACCACCAGCTGATTTGGATATTATGGCACATTGCTTTAATGTTTC 404749 Query 69924 ATATATACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCT 69971 ||| ||||| || ||||| |||||| |||| ||||||| |||||||| Sbjct 404750 ATAAATACCATCAATGCTGTCATCTTTCATAGTAAGAAGGAAACAGCT 404797 Score = 102 bits (112), Expect = 1e-16 Identities = 133/184 (72%), Gaps = 0/184 (0%) Strand=Plus/Plus Query 68948 ATCCATTATATGTTTCATAAGGTCCTTCCTGTTCAGCTAGTTCACAACTTGCCTCTAATG 69007 ||||| ||| |||| || || || || | ||| || ||||| | ||||||| Sbjct 403473 ATCCAGGATAACTTTCGTACGGGCCGAATTGCTGAGCGAGCTCACACGAAGATTCTAATG 403532 Query 69008 CACCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGACTATCGA 69067 | ||||||||||| ||||||||||| | |||||| || ||| |||||| ||||| | Sbjct 403533 CGCCGTAATAAATCGTTTCGAAAATTTGCTTATTTAGCAGTTGCGCTTCTTCGCTATCAA 403592 Query 69068 ATGGATAATGTAAAAGAATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGTC 69127 | ||||| | | || ||||| ||||| ||||| || ||||| ||||| || || || | Sbjct 403593 ACGGATAGCGCATTAGGATAAAAGCATCAGCCAAGCCTTGAACTCCAATTCCTATCGGAC 403652 Query 69128 TATG 69131 ||| Sbjct 403653 GATG 403656 Score = 96.9 bits (106), Expect = 5e-15 Identities = 127/176 (72%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 69997 GCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTGTATGTT 70056 ||||| || ||||| || || || |||||||||||||| ||||| | || ||||||||| Sbjct 404886 GCATTGAACAATGTTGGGGAGGCATGAGTGAACCATTTCTCAGACAACAAGTTGTATGTT 404945 Query 70057 TCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAACATATGC 70116 ||||| || | ||| | ||| ||| || || | | || | ||||| ||| || Sbjct 404946 TCAATGGCAGCTTCCAAATCATCTCCATGTATGCCAACAGACACTCTCATCATCATGTGT 405005 Query 70117 TGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAGAGT 70172 || || || ||||| | ||| | |||||||||| ||| ||| | |||||||| Sbjct 405006 TGTGGACGCTCTACAGGTTTTCCAGAAATTTTCAACAAGTAAGATCTCTCCAGAGT 405061 Score = 93.3 bits (102), Expect = 6e-14 Identities = 115/154 (75%), Gaps = 5/154 (3%) Strand=Plus/Plus Query 69152 CTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTAAGATTTCGGACTACTACTT 69211 |||| |||| |||||||||||||| ||| || ||||| ||||||||||| || |||| Sbjct 403735 CTTCGGGAACAGGATAATAATTAACATCGATGATTTTGTTAAGATTTCGCGTTATCACTT 403794 Query 69212 TAACCACGTCCTTTAGTTTGAGAAAATCAAATCGTCC-ATC---TATAACAAACATATTC 69267 | | ||||| ||||| ||| ||| | || || || | |||||||||||||| Sbjct 403795 TCGTTATTTCCTTCAGTTTTGGAAGGTCATA-CGCCCGGTCTGGTTTAACAAACATATTC 403853 Query 69268 AGTGCTACAGATGCTAGATTACAAACTGCTACCT 69301 ||||| | ||||| | ||| || ||||| |||| Sbjct 403854 AGTGCGATTGATGCCAAATTGCAGACTGCGACCT 403887 Score = 84.2 bits (92), Expect = 3e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 69325 ATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGATTTTGCTGATTACTCTTTTTG 69384 ||||| || || | ||| || |||||||| || |||| ||| |||||||| || | Sbjct 403966 ATCTCCGTGCACAAATTGCTGCATTTGATCGTGCCCAAATTCTGCTGATTTGATTTGCGG 404025 Query 69385 TTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCGAT 69440 ||||| || || || || || || ||||||| || ||||||||||| |||||||| Sbjct 404026 TTACATGCATCTTTATATAGGATGTACGGAGTTCCCGTTTCAATCTGGGATTCGAT 404081 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686661504245640