Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20magna_20[genbank_20GCA_5F001632505.1_202016-04-26] 28,801 sequences; 129,543,483 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq1005 149 5e-31 seq2190 116 3e-21 >seq1005 Length=1646370 Score = 149 bits (164), Expect = 5e-31 Identities = 251/360 (70%), Gaps = 5/360 (1%) Strand=Plus/Minus Query 43926 TACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAA 43985 |||| || || || ||||| ||||| || ||||| ||||| |||||||| || || || | Sbjct 377862 TACCTGAGGCTCGCTGTTTCTATGGTTTCCAAATAGCCATGGAAAATATCCACTCAGAGA 377803 Query 43986 TGTACAGTCTTCTGATAGATACGTACATCAAAGATGGGCACGAGAAGCATCGATTGTTT- 44044 ||||||| || | || || || |||||||| ||| || ||| || | ||| Sbjct 377802 TGTACAGCCTGTTAATTGAAACCTACATCAAGGATTCTGCTGA-AAGGATGAAACTTTTC 377744 Query 44045 AATGCGATAGAAACAGTACCTGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATA 44104 || || | || ||| | ||| || | || || ||||||||| | | |||||| Sbjct 377743 AACGCTGTTGAGACAATGCCTTGTGTTGCGAAGAAGGCTGACTGGGCCATGAGATGGATT 377684 Query 44105 ---AATTCAAATGATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATT 44161 || | ||| ||| | ||| || |||| || ||||| | |||||||||||| Sbjct 377683 GGTAACAGAGATGCACCTTACAGTGAAAGAATTGTAGCTTTTGCTGCTGTGGAAGGCATA 377624 Query 44162 TTCTTTTCAGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGG 44221 || || || || || ||||| || ||||||||| | || || |||||||||||||| || Sbjct 377623 TTTTTCTCTGGTTCCTTTGCTGCAATATTTTGGCTTAAAAAGCGAGGTTTGATGCCAGGA 377564 Query 44222 TTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGC 44281 |||| || || || || | || | | |||||||| | || ||||||||||| ||| Sbjct 377563 CTGACATTCTCGAACGAACTGATTTCTAGAGATGAAGGTCTGCACTGCGATTTTGCATGC 377504 Score = 93.3 bits (102), Expect = 3e-14 Identities = 72/86 (84%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 43700 TTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCG 43759 ||||| |||| || || || |||||||| || |||||||||||||||||||| | || Sbjct 378214 TTTGTGTTGTTCCCTATCCAGTATCATGATATTTGGCAAATGTACAAAAAAGCTGAAGCC 378155 Query 43760 TCATTTTGGACAGCAGAAGAAGTTGA 43785 ||||||||||| || ||||||||||| Sbjct 378154 TCATTTTGGACTGCTGAAGAAGTTGA 378129 >seq2190 Length=2111488 Score = 116 bits (128), Expect = 3e-21 Identities = 135/182 (74%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 41022 GCGTGGAACCCAACGGACGTACATTTGATGGCATTGCCACCTTGTCATTTGTTATGTCAG 41081 || ||||| ||||||| ||| | ||||| || ||||| || |||| || ||| Sbjct 1172618 GCTTGGAATCCAACGGCATTACCACTAATGGCGTTACCACCGTGCCATTGCTTGGCCCAG 1172677 Query 41082 TTTTACGTTTGCAATGGTGAACTGTCATGTCAATTGTATCAAAGATCAGGTGACATGGGA 41141 || || || |||||||||||||| || ||| ||||||||||||| | ||| ||||| Sbjct 1172678 TTCTATGTAGCAAATGGTGAACTGTCTTGCCAAATGTATCAAAGATCTGCTGATATGGGT 1172737 Query 41142 CTAGGGGTCCCGTTTAACATAGCGAGTTATGCTCTGCTCACGTATATGATTGCACACGTT 41201 |||| || || ||||||||||| || ||| || |||| || | ||||| || ||||| Sbjct 1172738 TTAGGTGTTCCCTTTAACATAGCCAGCTATTCTTTGCTGACATGCATGATAGCTCACGTC 1172797 Query 41202 AC 41203 || Sbjct 1172798 AC 1172799 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397316488100005