Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20magna_20[genbank_20GCA_5F001632505.1_202016-04-26] 28,801 sequences; 129,543,483 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq1253 131 1e-25 seq16310 86.0 5e-12 >seq1253 Length=553177 Score = 131 bits (144), Expect = 1e-25 Identities = 155/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 |||| ||| || ||||| || || ||||| |||||||| || | ||| | ||||| Sbjct 470186 ACCAGATGCAAAGTAGACTCCTTCTGAATGTTGTAGTCAGACAACGTACGCCCATCTTCC 470127 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 | ||| || ||||| | ||||||||||| ||||| || || | |||||| || || Sbjct 470126 AACTGCTTTCCGGCAAAGATGAGACGCTGCTGATCTGGTGGGATACCCTCCTTGTCCTGA 470067 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 ||||| ||| | | |||||| || || | | ||||||||| ||||| || | ||| Sbjct 470066 ATCTTAGCTTTTACGTTTTCTATGGTATCCGATGGTTCAACTTCGAGAGTAATGGTTTTC 470007 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 ||||||| |||||||| |||||||||||| Sbjct 470006 CCCGTCAAGGTTTTCACGAAGATTTGCATA 469977 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 ||||| || | || || || ||||| | ||||| ||||||||||| || ||||| Sbjct 470432 CCTCCACGAAGACGTAAAACTAAATGAAGGGTAGATTCTTTTTGAATGTTATAGTCTGAA 470373 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | || | || || ||||| || |||||| | || ||||| || || || || || Sbjct 470372 AGCGTACGACCATCCTCAAGCTGCTTGCCGGCGAAGATCAGACGTTGCTGGTCGGGAGGA 470313 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | ||| || ||||| ||| || || | |||| | ||||||| | ||||||| Sbjct 470312 ATACCTTCCTTATCTTGGATTTTAGCCTTAACATTTTCGATTGTGTCTGAAGGTTCAACT 470253 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || || || |||| ||| || |||| || || |||||||| |||||| Sbjct 470252 TCGAGCGTGATAGTTTTCCCAGTCAACGTCTTGACAAAGATCTGCATA 470205 >seq16310 Length=633 Score = 86.0 bits (94), Expect = 5e-12 Identities = 95/127 (75%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 ||||||| || | |||||||||||||| | ||||| |||||||| || || ||||| Sbjct 422 TGCCTCCCCGTAGACGCAATACCAAATGAAGAGTAGACTCTTTTTGGATGTTATAGTCAG 481 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 || | ||| ||||||| || || || || || |||| |||||||| ||||| || | Sbjct 482 ACAGCGTACGCCCGTCTTCTAGTTGCTTTCCAGCAAAAATAAGACGCTGCTGATCGGGTG 541 Query 27139 GCACACC 27145 | | ||| Sbjct 542 GGATACC 548 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424785242846712