Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20magna_20[genbank_20GCA_5F001632505.1_202016-04-26] 28,801 sequences; 129,543,483 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq626 89.7 6e-13 >seq626 Length=1369339 Score = 89.7 bits (98), Expect = 6e-13 Identities = 109/149 (73%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 179965 AGAGGGAACACACCGTAGTGATCACGACCAACCACAGAGAGACCAGCAACTGCGAGGGTC 180024 || ||||| ||||| | | |||||||||||||||| | ||||| || || | | | Sbjct 256804 AGTGGGAAGACACCAAATTTATCACGACCAACCACACCCAAACCAGAGACGGCCAAAGAC 256863 Query 180025 TTCGCGGAATCACCCTCCGTCACGATGAGCGTACACTTTCCAGATTGTGCCGTCCCTGCC 180084 || || ||||| || ||||||| ||||||||||| | || | | ||| ||||| Sbjct 256864 TTGGCTGAATCTCCTTCCGTCAAAATGAGCGTACAGTCGATCGAGTATCTCGTGCCTGCA 256923 Query 180085 TTGTTCGCGTCGTCCAACTTGGGAATACC 180113 ||||| || || |||| ||||||||||| Sbjct 256924 TTGTTGGCATCTTCCAGTTTGGGAATACC 256952 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618212555597560