Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20magna_20[genbank_20GCA_5F001632505.1_202016-04-26] 28,801 sequences; 129,543,483 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq1005 87.8 2e-12 seq626 82.4 9e-11 >seq1005 Length=1646370 Score = 87.8 bits (96), Expect = 2e-12 Identities = 188/275 (68%), Gaps = 6/275 (2%) Strand=Plus/Minus Query 94684 TATATTAAGGATGGTGCTGAGAAGAAGCAGCTCTTTGAAGCCATCCAAACAGTTCCGTGT 94743 || || |||||| |||||| | || | | || || | || | | ||| | || ||| Sbjct 377779 TACATCAAGGATTCTGCTGAAAGGATGAAACTTTTCAACGCTGTTGAGACAATGCCTTGT 377720 Query 94744 ATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATA-CAAAGTCGCGTTCCTTTGC 94802 || ||||| || || ||||| |||| ||| ||| || || || || |||| Sbjct 377719 GTTGCGAAGAAGGCTGACTGGGCCATGAGATGGATTGGTAACAGAGATGCA--CCTTACA 377662 Query 94803 -TGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGC- 94860 ||| || | | || ||||| ||| || || || || |||||||||||||| ||| Sbjct 377661 GTGAAAGAATTGTAGCTTTTGCTGCTGTGGAAGGCATATTTTTCTCTGGTTCCTT-TGCT 377603 Query 94861 GCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTT 94920 || || | |||||| || ||||||||| | |||||||| || ||||| ||||| || Sbjct 377602 GCAATATTTTGGCTTAAAAAGCGAGGTTTGATGCCAGGACTGACATTCTCGAACGAACTG 377543 Query 94921 ATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 94955 || ||| | || || || || ||| || ||||| Sbjct 377542 ATTTCTAGAGATGAAGGTCTGCACTGCGATTTTGC 377508 >seq626 Length=1369339 Score = 82.4 bits (90), Expect = 9e-11 Identities = 108/150 (72%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 169357 AAGAGGGAAGACACCGTAGTGATCACGACCAACGACGGAGAGACCCGCGACTGCGAGAGT 169416 ||| ||||||||||| | | |||||||||||| || | ||| | ||| || | || Sbjct 256803 AAGTGGGAAGACACCAAATTTATCACGACCAACCACACCCAAACCAGAGACGGCCAAAGA 256862 Query 169417 CTTCGCCGAGTCACCCTCGGTGACGATGAGCGTACATTTTCCAGATTGTGCCGTACCCGC 169476 ||| || || || || || || | ||||||||||| | || | | ||| || || Sbjct 256863 CTTGGCTGAATCTCCTTCCGTCAAAATGAGCGTACAGTCGATCGAGTATCTCGTGCCTGC 256922 Query 169477 CTTGTTCGCATCATCCAATTTGGGAATACC 169506 ||||| ||||| |||| |||||||||||| Sbjct 256923 ATTGTTGGCATCTTCCAGTTTGGGAATACC 256952 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583050818821240