Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20magna_20[genbank_20GCA_5F001632505.1_202016-04-26] 28,801 sequences; 129,543,483 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq1253 178 1e-39 seq2866 129 7e-25 seq16310 104 3e-17 >seq1253 Length=553177 Score = 178 bits (196), Expect = 1e-39 Identities = 176/228 (77%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||||||||||||| | || || || ||||| || || || ||||| | Sbjct 470206 ATGCAGATCTTTGTCAAGACGTTGACTGGGAAAACTATCACGCTCGAAGTTGAACCTTCA 470265 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | |||| | ||||||||||| || || ||||| || |||||||| |||||| Sbjct 470266 GACACAATCGAAAATGTTAAGGCTAAAATCCAAGATAAGGAAGGTATTCCTCCCGACCAG 470325 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || ||||| || || || || ||||| || ||||||| |||||| || |||||||||| Sbjct 470326 CAACGTCTGATCTTCGCCGGCAAGCAGCTTGAGGATGGTCGTACGCTTTCAGACTATAAC 470385 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 | ||||| ||||| || |||||| |||| || |||||||| || ||| Sbjct 470386 ATTCAAAAAGAATCTACCCTTCATTTAGTTTTACGTCTTCGTGGAGGA 470433 Score = 172 bits (190), Expect = 6e-38 Identities = 175/228 (77%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || || || | ||||| || |||||||| |||||||||||| || Sbjct 468560 ATGCAGATCTTCGTGAAAACTTTAACCGGGAAAACTATTACCCTTGAGGTTGAGCCATCG 468619 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||| | |||| | ||||| |||||||| |||||||| || ||||| ||||| ||| Sbjct 468620 GATACCATCGAAAATGTCAAGGCAAAAATTCAAGACAAGGAAGGCATTCCCCCAGATCAG 468679 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || ||||| || ||||| | || |||| |||||| | | || ||||| Sbjct 468680 CAGCGTCTCATCTTTGCCGGAAAGCAGTTGGAAGATGGTCGTACTTTGTCCGATTATAAC 468739 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 | ||||| || || |||||||| |||| | ||||| ||||| ||| Sbjct 468740 ATTCAAAAAGAGTCGACTCTTCACTTAGTTCTACGTCTCCGCGGCGGA 468787 Score = 152 bits (168), Expect = 6e-32 Identities = 165/219 (75%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| |||||||||||||| | || ||||| || || ||||||||||||||| | Sbjct 467956 AATGCAGATCTTTGTCAAGACATTGACTGGCAAAACCATCACTCTTGAGGTTGAGCCTTC 468015 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||| | |||| ||| | ||||| || ||||| || ||||| || ||||| || || || Sbjct 468016 TGACACTATTGAGAATGTTAAGGCCAAGATTCAAGATAAGGAAGGTATTCCACCTGATCA 468075 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 ||| ||| | || |||||||| ||||| || ||||||| ||||| | | || || || Sbjct 468076 GCAACGTTTGATCTTTGCTGGCAAGCAGCTTGAGGATGGCCGTACTTTGTCCGATTACAA 468135 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCT 27623 |||| |||||||| ||||| ||| | || |||| || Sbjct 468136 CATCCAGAAGGAATCAACTCTCCATTTGGTTCTGCGCCT 468174 Score = 140 bits (154), Expect = 4e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| || || || | || || || || |||||||| || ||||| || Sbjct 469978 ATGCAAATCTTCGTGAAAACCTTGACGGGGAAAACCATTACTCTCGAAGTTGAACCATCG 470037 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||| | ||| | || ||||| ||||||||||||||||| || || ||||| ||| Sbjct 470038 GATACCATAGAAAACGTAAAAGCTAAGATTCAGGACAAGGAGGGTATCCCACCAGATCAG 470097 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || ||||| || ||||| | || |||| ||||| | | ||||| || Sbjct 470098 CAGCGTCTCATCTTTGCCGGAAAGCAGTTGGAAGATGGGCGTACGTTGTCTGACTACAAC 470157 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || ||||| || ||| | ||||| || | || || || ||||| Sbjct 470158 ATTCAGAAGGAGTCTACTTTGCATCTGGTGCTTCGACTCCGAGGTGG 470204 Score = 122 bits (134), Expect = 1e-22 Identities = 102/125 (82%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 27508 GGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGT 27567 ||||||||||| || ||||| ||| | || ||||||||||| ||||| ||||||| |||| Sbjct 469059 GGAATTCCTCCTGATCAGCAACGTTTGATCTTTGCTGGTAAACAACTGGAGGATGGTCGT 469118 Query 27568 ACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGC 27627 ||| || | || || || |||||||||| || ||||||||||| || | ||||| ||| Sbjct 469119 ACCTTATCGGATTACAACATCCAAAAGGAGTCGACTCTTCATCTGGTTCTTCGTCTGCGC 469178 Query 27628 GGTGG 27632 ||||| Sbjct 469179 GGTGG 469183 Score = 82.4 bits (90), Expect = 9e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 27508 GGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGT 27567 || || ||||| || || || ||||| ||||| ||||||||||| | || |||| ||| Sbjct 468434 GGTATCCCTCCCGATCAACAACGTCTTATTTTCGCTGGTAAGCAGTTGGAAGATGGACGT 468493 Query 27568 ACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGC 27627 || | | ||||| || |||| || ||||| || ||||| | || | ||||||||| Sbjct 468494 ACGTTGTCCGACTACAACATCCAGAAAGAATCAACCCTTCACTTGGTTCTTCGTCTTCGC 468553 Query 27628 GGTGG 27632 ||||| Sbjct 468554 GGTGG 468558 Score = 82.4 bits (90), Expect = 9e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 27508 GGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGT 27567 || || || || ||||| ||||| || ||||||||||| |||||| | || |||| || Sbjct 469457 GGTATCCCACCCGACCAACAGCGACTTATTTTTGCTGGAAAGCAATTGGAAGATGGACGA 469516 Query 27568 ACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGC 27627 || ||| | ||||| ||| | || || || || || || ||| | || |||||||| || Sbjct 469517 ACGCTATCCGACTACAATATTCAGAAAGAGTCTACACTGCATTTGGTATTGCGTCTGCGA 469576 Query 27628 GGTGG 27632 || || Sbjct 469577 GGAGG 469581 >seq2866 Length=178446 Score = 129 bits (142), Expect = 7e-25 Identities = 122/156 (78%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| || || || ||||| | || || ||||| || || |||||||||||| | Sbjct 176848 AATGCAGATTTTCGTTAAGACATTAACGGGTAAGACCATCACCCTTGAGGTTGAGCCTTC 176789 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||||| ||| | |||| | ||||| ||||| || |||||||| || |||||||| ||||| Sbjct 176788 TGATACCATCGAAAATGTTAAGGCGAAAATCCAAGACAAGGAAGGTATTCCTCCCGACCA 176729 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGA 27560 ||| ||| | |||||||||||||| || || || || Sbjct 176728 GCAACGTTTGATTTTTGCTGGTAAACAGCTGGAAGA 176693 >seq16310 Length=633 Score = 104 bits (114), Expect = 3e-17 Identities = 98/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 27508 GGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGT 27567 || || || || || ||||||||||| ||||||||||| |||||||| || || | ||| Sbjct 548 GGTATCCCACCCGATCAGCAGCGTCTTATTTTTGCTGGAAAGCAACTAGAAGACGGGCGT 489 Query 27568 ACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGC 27627 || || | |||||||| ||||||| || || ||||||||| | || |||||||| || Sbjct 488 ACGCTGTCTGACTATAACATCCAAAAAGAGTCTACTCTTCATTTGGTATTGCGTCTACGG 429 Query 27628 GGTGG 27632 || || Sbjct 428 GGAGG 424 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570105081127120