Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20magna_20[genbank_20GCA_5F001632505.1_202016-04-26] 28,801 sequences; 129,543,483 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq1253 107 1e-18 seq2866 95.1 8e-15 >seq1253 Length=553177 Score = 107 bits (118), Expect = 1e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | |||||| || || ||||| || || || |||||||||||||| |||||| Sbjct 470432 CCTCCACGAAGACGTAAAACTAAATGAAGGGTAGATTCTTTTTGAATGTTATAGTCTGAA 470373 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | || ||||| || || ||||| || || | ||| || ||||| || || Sbjct 470372 AGCGTACGACCATCCTCAAGCTGCTTGCCGGCGAAGATCAGACGTTGCTGGTCGGGAGGA 470313 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAAC-GATAAAATTGTGTCTTCGCTCTCCAC 34658 | || ||||| ||| ||| ||| | ||||| | ||||||||| || || Sbjct 470312 ATACCTTCCTTATCTTGGAT-TTTAGCCTTAACATTTTCGATTGTGTCTGAAGGTTCAAC 470254 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||| | || || ||||| || || ||||| || ||||| |||||||| Sbjct 470253 TTCGAGCGTGATAGTTTTCCCAGTCAACGTCTTGACAAAGATCTGCAT 470206 Score = 105 bits (116), Expect = 4e-18 Identities = 163/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 ||||| | ||||| | || || || ||||| ||| ||||||||||||||||| || Sbjct 468786 CCGCCGCGGAGACGTAGAACTAAGTGAAGAGTCGACTCTTTTTGAATGTTATAATCGGAC 468727 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | || || | ||||| | || || |||||||| || | |||||| || || || || Sbjct 468726 AAAGTACGACCATCTTCCAACTGCTTTCCGGCAAAGATGAGACGCTGCTGATCTGGGGGA 468667 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCT--CTCCA 34657 | || ||||||||| ||| ||||| || || | || || | || | ||| | Sbjct 468666 ATGCCTTCCTTGTCT-TGAATTTTTGCCTTGACATTTTCGATG-GTATCCGATGGCTCAA 468609 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 | || | ||| || ||||| |||||||| |||||||| || |||||||| Sbjct 468608 CCTCAAGGGTAATAGTTTTCCCGGTTAAAGTTTTCACGAAGATCTGCAT 468560 Score = 91.5 bits (100), Expect = 9e-14 Identities = 161/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| || |||| |||||||||||||| ||||| || ||||| ||||| || Sbjct 468183 CCTCCTCTGAGGCGCAGAACCAAATGGAGAGTTGATTCCTTCTGGATGTTGTAATCGGAC 468124 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | || || | || ||||| || || || ||||| || ||||| || || || || || Sbjct 468123 AAAGTACGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAAACGTTGCTGATCAGGTGGA 468064 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | || ||||| ||| ||| || | ||||| | ||| ||||| ||| || Sbjct 468063 ATACCTTCCTTATCT-TGAATCTTGGCCTTAACATTCTCAATAGTGTCAGAAGGCTCAAC 468005 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTG 34710 || | || || ||||| || || || || || ||||| |||||||| ||| Sbjct 468004 CTCAAGAGTGATGGTTTTGCCAGTCAATGTCTTGACAAAGATCTGCATTTTG 467953 Score = 84.2 bits (92), Expect = 1e-11 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || |||| || || | ||||| ||| | ||| |||||| |||||||| || || || Sbjct 470204 CCACCTCGGAGTCGAAGCACCAGATGCAAAGTAGACTCCTTCTGAATGTTGTAGTCAGAC 470145 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | || ||| | ||||| | || || |||||||| || | |||||| || || || || Sbjct 470144 AACGTACGCCCATCTTCCAACTGCTTTCCGGCAAAGATGAGACGCTGCTGATCTGGTGGG 470085 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCT--CTCCA 34657 | ||||||||||| ||| || | ||| ||| | || || | || | || | Sbjct 470084 ATACCCTCCTTGTC-CTGAATCTTAGCTTTTACGTTTTCTATG-GTATCCGATGGTTCAA 470027 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||| | || || ||||| || || || |||||||| || || ||||| Sbjct 470026 CTTCGAGAGTAATGGTTTTCCCCGTCAAGGTTTTCACGAAGATTTGCAT 469978 >seq2866 Length=178446 Score = 95.1 bits (104), Expect = 8e-15 Identities = 141/196 (72%), Gaps = 3/196 (2%) Strand=Plus/Plus Query 34517 CCTTT-TGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAAT 34575 ||||| |||||||| ||||| || | || || ||||||| || |||||||| ||||| Sbjct 176657 CCTTTCTGAATGTTGTAATCAGATAAAGTGCGTCCGTCTTCCAGCTGTTTACCAGCAAAA 176716 Query 34576 ATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT 34635 || ||||| || ||||| || || | || ||||||||| ||| ||| | ||||| | Sbjct 176717 ATCAAACGTTGCTGGTCGGGAGGAATACCTTCCTTGTCTTGGAT-TTTCGCCTTAACATT 176775 Query 34636 AAA-ATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCAC 34694 || || || ||| || || | ||| || || ||||| ||||| || || || Sbjct 176776 TTCGATGGTATCAGAAGGCTCAACCTCAAGGGTGATGGTCTTACCCGTTAATGTCTTAAC 176835 Query 34695 AAAAATCTGCATGTTG 34710 ||||||||||| ||| Sbjct 176836 GAAAATCTGCATTTTG 176851 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314619126074633