Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20magna_20[genbank_20GCA_5F001632505.1_202016-04-26] 28,801 sequences; 129,543,483 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq1253 149 5e-31 seq1952 122 8e-23 seq16310 93.3 4e-14 seq15804 93.3 4e-14 seq2866 89.7 4e-13 >seq1253 Length=553177 Score = 149 bits (164), Expect = 5e-31 Identities = 171/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || |||||| | ||||| || ||||||| ||||| || || || || Sbjct 468560 ATGCAGATCTTCGTGAAAACTTTAACCGGGAAAACTATTACCCTTGAGGTTGAGCCATCG 468619 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || || | ||||| ||||||||||||||| |||||||| || || ||||| Sbjct 468620 GATACCATCGAAAATGTCAAGGCAAAAATTCAAGACAAGGAAGGCATTCCCCCAGATCAG 468679 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | ||||| || || |||||||| || || | |||||||| ||| Sbjct 468680 CAGCGTCTCATCTTTGCCGGAAAGCAGTTGGAAGATGGTCGTACTTTGTCCGATTATAAC 468739 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||||| |||||||| | || || ||| | ||| | || || || || Sbjct 468740 ATTCAAAAAGAGTCGACTCTTCACTTAGTTCTACGTCTCCGCGGCGGAAT 468789 Score = 122 bits (134), Expect = 8e-23 Identities = 156/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || |||| ||||| | || |||||||| || || || || Sbjct 467957 ATGCAGATCTTTGTCAAGACATTGACTGGCAAAACCATCACTCTTGAGGTTGAGCCTTCT 468016 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||||| || || || |||||||| || ||||| || ||||| ||||| Sbjct 468017 GACACTATTGAGAATGTTAAGGCCAAGATTCAAGATAAGGAAGGTATTCCACCTGATCAG 468076 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||||| || | || ||||| || | || || | || | |||||||||||| Sbjct 468077 CAACGTTTGATCTTTGCTGGCAAGCAGCTTGAGGATGGCCGTACTTTGTCCGATTACAAC 468136 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCG 27202 || || ||||| || || | ||||||||| |||| Sbjct 468137 ATCCAGAAGGAATCAACTCTCCATTTGGTTCTGCG 468171 Score = 122 bits (134), Expect = 8e-23 Identities = 167/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || ||||| |||| || || | |||||||| ||||| ||||| || Sbjct 469978 ATGCAAATCTTCGTGAAAACCTTGACGGGGAAAACCATTACTCTCGAAGTTGAACCATCG 470037 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || || | || ||| || ||||| ||||| || || || ||||| ||||| Sbjct 470038 GATACCATAGAAAACGTAAAAGCTAAGATTCAGGACAAGGAGGGTATCCCACCAGATCAG 470097 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTT-TCCGATTACAA 27166 |||||| | || | ||||| || || |||||||| | || |||| || || ||||| Sbjct 470098 CAGCGTCTCATCTTTGCCGGAAAGCAGTTGGAAGATGGG-CGTACGTTGTCTGACTACAA 470156 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||| |||||||| || || ||| |||| | || | || ||||| || Sbjct 470157 CATTCAGAAGGAGTCTACTTTGCATCTGGTGCTTCGACTCCGAGGTGGTAT 470207 Score = 118 bits (130), Expect = 9e-22 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || |||| || || |||| || || ||||| ||||| || Sbjct 470206 ATGCAGATCTTTGTCAAGACGTTGACTGGGAAAACTATCACGCTCGAAGTTGAACCTTCA 470265 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | || || ||||| ||||| || ||||| || || ||||| || Sbjct 470266 GACACAATCGAAAATGTTAAGGCTAAAATCCAAGATAAGGAAGGTATTCCTCCCGACCAG 470325 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||| | || | ||||||||| || | || || || || |||| || || ||| Sbjct 470326 CAACGTCTGATCTTCGCCGGCAAGCAGCTTGAGGATGGTCGTACGCTTTCAGACTATAAC 470385 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||||| || || ||| | ||||| ||||| ||| | || || || || Sbjct 470386 ATTCAAAAAGAATCTACCCTTCATTTAGTTTTACGTCTTCGTGGAGGAAT 470435 Score = 98.7 bits (108), Expect = 9e-16 Identities = 84/104 (81%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| ||||| ||||| || ||| |||| ||| | |||||||| || ||| Sbjct 468185 ATGCAGATCTTTGTTAAAACCCTGACTGGAAAGACTATCACTTTGGAAGTGGAGCCTTCC 468244 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGG 27091 ||| ||||||| | ||||| ||||| |||||||||||||| Sbjct 468245 GACACGATTGAAAATGTCAAGGCGAAAATCCAAGACAAAGAAGG 468288 Score = 93.3 bits (102), Expect = 4e-14 Identities = 98/129 (76%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 27089 AGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTC 27148 ||| || || || ||||| || ||||| || | || || |||||| |||| || || Sbjct 469058 AGGAATTCCTCCTGATCAGCAACGTTTGATCTTTGCTGGTAAACAACTGGAGGATGGTCG 469117 Query 27149 GACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCG 27208 ||| | || ||||||||||| |||||||||||||| | ||| ||||| | ||| |||| Sbjct 469118 TACCTTATCGGATTACAACATCCAAAAGGAGTCGACTCTTCATCTGGTTCTTCGTCTGCG 469177 Query 27209 GGGTGGCAT 27217 |||||||| Sbjct 469178 CGGTGGCAT 469186 Score = 84.2 bits (92), Expect = 2e-11 Identities = 98/130 (75%), Gaps = 2/130 (2%) Strand=Plus/Plus Query 27089 AGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTC 27148 ||| || |||||||| |||||||| | || | || || || ||||||||||| | | Sbjct 469456 AGGTATCCCACCCGACCAACAGCGACTTATTTTTGCTGGAAAGCAATTGGAAGA-TGGAC 469514 Query 27149 GACCG-TTTCCGATTACAACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGC 27207 || || | ||||| ||||| ||||| || ||||| || | |||||||| |||||| ||| Sbjct 469515 GAACGCTATCCGACTACAATATTCAGAAAGAGTCTACACTGCATTTGGTATTGCGTCTGC 469574 Query 27208 GGGGTGGCAT 27217 | || || || Sbjct 469575 GAGGAGGTAT 469584 >seq1952 Length=5232 Score = 122 bits (134), Expect = 8e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 135533 ATGTATTGGGCAAAAAAGATATTGGAATGGTCTGCATCGCCTGCAGAGGCGCTACAACAC 135592 ||||| ||||| ||||| || ||||||||| | | |||| | ||| || ||| || Sbjct 316 ATGTACTGGGCCAAAAAAATTTTGGAATGGACGGAGACGCCCGAAGAAGCTCTAAGACTT 375 Query 135593 GCAATATTTTTTAATGATTACTACAGTTTAGATGGACGCGATTCAAATGGCTACGTAGGT 135652 || |||| | | || ||| ||||||||||||||| | || | | ||| || || || Sbjct 376 GCTATATATCTGAACGATAGATACAGTTTAGATGGAAGAGACCCTAGTGGTTATGTTGGC 435 Query 135653 TGTATGTGGTCTATTTGCGGTGTACACGATCAAGGATGGAAGGAGCGCAAAGTGTTTGGC 135712 ||||||||||| || || ||| | || || || |||||| | || | || || || Sbjct 436 TGTATGTGGTCCATCTGTGGTATTCATGACATGGGCTGGAAGCAACGAGATGTTTTCGGA 495 Query 135713 AAGATTCGCTATATGAACTATGACGGTTGTACAAGAAAATTTAATGT 135759 ||||||||||| |||||||| | || ||| | | |||||| |||| Sbjct 496 AAGATTCGCTACATGAACTACAAAGGCTGTCAACGCAAATTTGATGT 542 >seq16310 Length=633 Score = 93.3 bits (102), Expect = 4e-14 Identities = 100/130 (77%), Gaps = 2/130 (2%) Strand=Plus/Minus Query 27089 AGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTC 27148 ||| || |||||||| || |||||| | || | || || || ||||||||||| | | Sbjct 147 AGGGATCCCACCCGACCAGCAGCGTCTGATTTTTGCTGGAAAGCAATTGGAAGATGGG-C 89 Query 27149 GACCGTT-TCCGATTACAACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGC 27207 | |||| ||||| ||||||||||| || ||||| || || |||||||| |||||| ||| Sbjct 88 GTACGTTGTCCGACTACAACATTCAGAAAGAGTCTACGTTGCATTTGGTGTTGCGTCTGC 29 Query 27208 GGGGTGGCAT 27217 | || || || Sbjct 28 GTGGAGGTAT 19 >seq15804 Length=1078 Score = 93.3 bits (102), Expect = 4e-14 Identities = 96/126 (76%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 27089 AGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTC 27148 ||| || ||||| ||||| ||| | ||||| | ||||||||||| ||||| || || Sbjct 626 AGGTATCCCACCTGATCAGCAGAGATTAATCTTTGCCGGCAAACAGTTGGAGGATGGTCG 567 Query 27149 GACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCG 27208 || | ||||||||||| || |||||||| || |||||||||||||| | || | || Sbjct 566 TACTTTGTCCGATTACAATATCCAAAAGGAATCCACCTTACATTTGGTGCTCCGCCTTCG 507 Query 27209 GGGTGG 27214 ||||| Sbjct 506 TGGTGG 501 >seq2866 Length=178446 Score = 89.7 bits (98), Expect = 4e-13 Identities = 135/191 (71%), Gaps = 1/191 (1%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || | || || ||| | || || ||||| || || || || Sbjct 176847 ATGCAGATTTTCGTTAAGACATTAACGGGTAAGACCATCACCCTTGAGGTTGAGCCTTCT 176788 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || || | || || ||||| |||||||| ||||| || || ||||| || Sbjct 176787 GATACCATCGAAAATGTTAAGGCGAAAATCCAAGACAAGGAAGGTATTCCTCCCGACCAG 176728 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||||| || | || || ||||| |||||||| | || | || ||||||||| Sbjct 176727 CAACGTTTGATTTTTGCTGGTAAACAGCTGGAAGACGGACGCACTTTATCTGATTACAAC 176668 Query 27168 ATTCA-AAAGG 27177 ||||| ||||| Sbjct 176667 ATTCAGAAAGG 176657 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434761823939520