Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20magna_20[genbank_20GCA_5F001632505.1_202016-04-26] 28,801 sequences; 129,543,483 total letters Query= NC_029119.1 Length=127726 Score E Sequences producing significant alignments: (Bits) Value seq2190 86.0 5e-12 >seq2190 Length=2111488 Score = 86.0 bits (94), Expect = 5e-12 Identities = 138/196 (70%), Gaps = 2/196 (1%) Strand=Plus/Minus Query 126161 TGTCAGTAAAGCATAACTTGCAATATTGAAAGGAACACCTAAAAATATATCAGCACTTCT 126220 |||||| |||| ||| || || || || || |||||||||||| ||||||||| ||| Sbjct 1172779 TGTCAGCAAAGAATAGCTGGCTATGTTAAAGGGAACACCTAAACCCATATCAGCAGATCT 1172720 Query 126221 TTGATATAATTGACAATTTAATTTACCCTCTTGTACGTAAAATTGAAACATTGTGTGGCA 126280 |||||| | ||| ||| | || ||| | | ||| || || || || ||||| Sbjct 1172719 TTGATACATTTGGCAAGACAGTTCACCATTTGCTACATAGAACTGGGCCAAGCAATGGCA 1172660 Query 126281 AGGTGGTAATGCCATTGAATCG-ATTTCAGTAGGATTCCATGCTGAAACAATGTGACGTC 126339 |||||||| |||||| | | | | | | || |||||||| |||| || ||| |||| Sbjct 1172659 CGGTGGTAACGCCATT-AGTGGTAATGCCGTTGGATTCCAAGCTGTAAGAATCATGCGTC 1172601 Query 126340 GAGAGTTTGGATTGGT 126355 || || ||||| || Sbjct 1172600 GATCGTCAGGATTTGT 1172585 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408454976981807