Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20magna_20[genbank_20GCA_5F001632505.1_202016-04-26] 28,801 sequences; 129,543,483 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq1253 100 2e-16 seq16310 96.9 2e-15 >seq1253 Length=553177 Score = 100 bits (110), Expect = 2e-16 Identities = 162/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || || ||||||||| | || |||||| |||||| |||| || || || | Sbjct 468560 ATGCAGATCTTCGTGAAAACTTTAACCGGGAAAACTATTACCCTTGAGGTTGAGC-CATC 468618 Query 27850 G---ACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 | || || | ||| ||||| |||||| ||||| ||||| |||| || Sbjct 468619 GGATACCATCGAAAAT--GTCAAGGCAAAAATTCAAGACAAGGAAGGCATTCCCCCAGAT 468676 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 ||||| || | || ||||||||||| || ||||| || | || | ||||||||||| Sbjct 468677 CAGCAGCGTCTCATCTTTGCCGGAAAGCAGTTGGAAGATGGTCGTACTTTGTCCGATTAT 468736 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||| ||||||||| ||| | || || ||| | ||| | || ||||| Sbjct 468737 AACATTCAAAAAGAGTCGACTCTTCACTTAGTTCTACGTCTCCGCGGCGG 468786 Score = 84.2 bits (92), Expect = 2e-11 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 27904 GAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGAT 27963 || |||||||| || || ||||| || |||||| |||| || | || | ||| || ||| Sbjct 469071 GATCAGCAACGTTTGATCTTTGCTGGTAAACAACTGGAGGATGGTCGTACCTTATCGGAT 469130 Query 27964 TACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017 |||||||||||||| ||| ||| | ||| ||||| | ||| |||| || ||| Sbjct 469131 TACAACATCCAAAAGGAGTCGACTCTTCATCTGGTTCTTCGTCTGCGCGGTGGC 469184 >seq16310 Length=633 Score = 96.9 bits (106), Expect = 2e-15 Identities = 89/113 (79%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 27904 GAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGAT 27963 || ||||| || | |||||||| ||||| |||||||| || | || | |||||||| Sbjct 134 GACCAGCAGCGTCTGATTTTTGCTGGAAAGCAATTGGAAGATGGGCGTACGTTGTCCGAC 75 Query 27964 TACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||||| || |||||| || ||||||||||| |||||| ||||||| || Sbjct 74 TACAACATTCAGAAAGAGTCTACGTTGCATTTGGTGTTGCGTCTGCGTGGAGG 22 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355737487960527