Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20magna_20[genbank_20GCA_5F001632505.1_202016-04-26] 28,801 sequences; 129,543,483 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq1253 163 7e-35 seq2866 136 9e-27 >seq1253 Length=553177 Score = 163 bits (180), Expect = 7e-35 Identities = 171/225 (76%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAG 210949 || |||||| | || || | ||||| || || |||||||| |||||||| || | ||| Sbjct 470430 TCCACGAAGACGTAAAACTAAATGAAGGGTAGATTCTTTTTGAATGTTATAGTCTGAAAG 470371 Query 210950 GGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAAC 211009 || | ||||| || ||||||||||| |||||||| || ||||| ||||| ||||||| Sbjct 470370 CGTACGACCATCCTCAAGCTGCTTGCCGGCGAAGATCAGACGTTGCTGGTCGGGAGGAAT 470311 Query 211010 TCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTC 211069 |||||||| || ||||| || || || |||||||| ||||| || |||||| || Sbjct 470310 ACCTTCCTTATCTTGGATTTTAGCCTTAACATTTTCGATTGTGTCTGAAGGTTCAACTTC 470251 Query 211070 GAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||| ||||| || || || || | ||||| ||||| | |||||| Sbjct 470250 GAGCGTGATAGTTTTCCCAGTCAACGTCTTGACAAAGATCTGCAT 470206 Score = 141 bits (156), Expect = 2e-28 Identities = 164/221 (74%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 || || | ||| || | ||||||||| ||||||||||| ||||||||||| | | || Sbjct 468780 CGGAGACGTAGAACTAAGTGAAGAGTCGACTCTTTTTGAATGTTATAATCGGACAAAGTA 468721 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 | |||||||||| |||||| || || ||||| || || || || || || |||| ||| Sbjct 468720 CGACCATCTTCCAACTGCTTTCCGGCAAAGATGAGACGCTGCTGATCTGGGGGAATGCCT 468661 Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073 |||||||| || || ||| || || ||||||||||| || || |||||||| || Sbjct 468660 TCCTTGTCTTGAATTTTTGCCTTGACATTTTCGATGGTATCCGATGGCTCAACCTCAAGG 468601 Query 211074 GTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || || || | ||| || || || | |||||| Sbjct 468600 GTAATAGTTTTCCCGGTTAAAGTTTTCACGAAGATCTGCAT 468560 Score = 132 bits (146), Expect = 1e-25 Identities = 153/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 210912 TGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGC 210971 || ||||| || || || |||||||| ||||| | | || | ||||| || |||||| Sbjct 468159 TGGAGAGTTGATTCCTTCTGGATGTTGTAATCGGACAAAGTACGGCCATCCTCAAGCTGC 468100 Query 210972 TTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTT 211031 ||||| || ||||| | ||||| || ||||| |||| |||||||| || || ||||| Sbjct 468099 TTGCCAGCAAAGATCAAACGTTGCTGATCAGGTGGAATACCTTCCTTATCTTGAATCTTG 468040 Query 211032 TGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTG 211091 || || || || || |||||||| |||||||| |||||||| || || || || Sbjct 468039 GCCTTAACATTCTCAATAGTGTCAGAAGGCTCAACCTCAAGAGTGATGGTTTTGCCAGTC 467980 Query 211092 AGAGTCTTTACAAACACCTGCATTTT 211117 | ||||| ||||| | ||||||||| Sbjct 467979 AATGTCTTGACAAAGATCTGCATTTT 467954 Score = 120 bits (132), Expect = 7e-22 Identities = 159/221 (72%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 || |||| || || || || | ||| ||||| || || ||||| || || | | || Sbjct 470198 CGGAGTCGAAGCACCAGATGCAAAGTAGACTCCTTCTGAATGTTGTAGTCAGACAACGTA 470139 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 | |||||||||| |||||| || || ||||| || || || || || || || | || Sbjct 470138 CGCCCATCTTCCAACTGCTTTCCGGCAAAGATGAGACGCTGCTGATCTGGTGGGATACCC 470079 Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073 ||||||||||| ||||| ||| |||||||| ||||| || || |||||| |||||| Sbjct 470078 TCCTTGTCCTGAATCTTAGCTTTTACGTTTTCTATGGTATCCGATGGTTCAACTTCGAGA 470019 Query 211074 GTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || ||||| | || || || || | ||||| Sbjct 470018 GTAATGGTTTTCCCCGTCAAGGTTTTCACGAAGATTTGCAT 469978 Score = 109 bits (120), Expect = 1e-18 Identities = 93/115 (81%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 ||||| | ||| || | |||||| ||||||||||| || ||||||||||||| | || Sbjct 469970 CGAAGACGTAGAACCAAGTGAAGGGTGGACTCTTTCTGAATGTTATAATCCGACAACGTA 469911 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAA 211008 | |||||| || ||||||||||| ||||||||||| ||||| || || || |||| Sbjct 469910 CGTCCATCCTCTAGCTGCTTGCCAGCGAAGATAAGACGTTGCTGATCGGGCGGAA 469856 Score = 93.3 bits (102), Expect = 1e-13 Identities = 87/111 (78%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || || |||||||| ||||| ||||||||||| ||||||| | ||| | ||||| Sbjct 469168 AGAACCAGATGAAGAGTCGACTCCTTTTGGATGTTGTAATCCGATAAGGTACGACCATCC 469109 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 ||||| || || || || ||||| | ||||| || |||||||||| |||| Sbjct 469108 TCCAGTTGTTTACCAGCAAAGATCAAACGTTGCTGATCAGGAGGAATTCCT 469058 Score = 87.8 bits (96), Expect = 4e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 ||||| | || || | |||||| || || ||||| |||||||| || || | | || Sbjct 468552 CGAAGACGAAGAACCAAGTGAAGGGTTGATTCTTTCTGGATGTTGTAGTCGGACAACGTA 468493 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGG 211006 | ||||||||||| |||||| || ||||| ||||| |||||||| || ||||| Sbjct 468492 CGTCCATCTTCCAACTGCTTACCAGCGAAAATAAGACGTTGTTGATCGGGAGG 468440 >seq2866 Length=178446 Score = 136 bits (150), Expect = 9e-27 Identities = 146/193 (76%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 210925 CTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGA 210984 |||| || ||||| ||||| | | || | ||| ||||||||||| || || || || | Sbjct 176658 CTTTCTGAATGTTGTAATCAGATAAAGTGCGTCCGTCTTCCAGCTGTTTACCAGCAAAAA 176717 Query 210985 TAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTT 211044 | | ||||| ||||| ||||||| ||||||||||| ||||| || || || |||| Sbjct 176718 TCAAACGTTGCTGGTCGGGAGGAATACCTTCCTTGTCTTGGATTTTCGCCTTAACATTTT 176777 Query 211045 CGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAA 211104 ||||||| ||||| |||||||| || ||||| ||||| ||||| | ||||| || | Sbjct 176778 CGATGGTATCAGAAGGCTCAACCTCAAGGGTGATGGTCTTACCCGTTAATGTCTTAACGA 176837 Query 211105 ACACCTGCATTTT 211117 | | ||||||||| Sbjct 176838 AAATCTGCATTTT 176850 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1158724258060365