Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20magna_20[genbank_20GCA_5F001632505.1_202016-04-26] 28,801 sequences; 129,543,483 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq2866 127 1e-24 seq1253 123 2e-23 seq15804 87.8 1e-12 >seq2866 Length=178446 Score = 127 bits (140), Expect = 1e-24 Identities = 146/194 (75%), Gaps = 2/194 (1%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 |||||||||||||||||||| || | ||||| || || ||||| || || ||||| | Sbjct 176850 AAAATGCAGATTTTCGTTAAGACATTAACGGGTAAGACCATCACCCTTGAGGTTGAGCCT 176791 Query 23668 ACGGACACTGTTGAAA-TATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | || || | |||| | |||| | |||| | ||||| |||||| | || || || Sbjct 176790 TCTGATACCATCGAAAATGTTAAGGCGAAAA-TCCAAGACAAGGAAGGTATTCCTCCCGA 176732 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 || || ||||| || ||||| || ||||| |||||||||| |||||||||| ||||| Sbjct 176731 CCAGCAACGTTTGATTTTTGCTGGTAAACAGCTGGAAGACGGACGCACTTTATCTGATTA 176672 Query 23787 CAACATACAAAAAG 23800 |||||| || |||| Sbjct 176671 CAACATTCAGAAAG 176658 >seq1253 Length=553177 Score = 123 bits (136), Expect = 2e-23 Identities = 155/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| ||||| | || || ||||| || || || || ||||| | || Sbjct 468560 ATGCAGATCTTCGTGAAAACTTTAACCGGGAAAACTATTACCCTTGAGGTTGAGCCATCG 468619 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || | |||| | || ||||||| ||||| ||||| | || |||||||| Sbjct 468620 GATACCATCGAAAATGTCAAGGCAAAAATTCAAGACAAGGAAGGCATTCCCCCAGATCAG 468679 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| | || |||||||| || || ||||||| | || ||||| |||||| ||| Sbjct 468680 CAGCGTCTCATCTTTGCCGGAAAGCAGTTGGAAGATGGTCGTACTTTGTCCGATTATAAC 468739 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTA 23823 || ||||||||||| || | || |||||| || Sbjct 468740 ATTCAAAAAGAGTCGACTCTTCACTTAGTTCTA 468772 Score = 120 bits (132), Expect = 2e-22 Identities = 149/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || ||||| |||||| | ||||| ||||| || |||||||||||||| | || Sbjct 469978 ATGCAAATCTTCGTGAAAACCTTGACGGGGAAAACCATTACTCTCGAAGTTGAACCATCG 470037 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || | |||| ||||| || ||| ||||| || ||| | || |||||||| Sbjct 470038 GATACCATAGAAAACGTAAAAGCTAAGATTCAGGACAAGGAGGGTATCCCACCAGATCAG 470097 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| | || |||||||| || || ||||||| | || || || || |||||| Sbjct 470098 CAGCGTCTCATCTTTGCCGGAAAGCAGTTGGAAGATGGGCGTACGTTGTCTGACTACAAC 470157 Query 23791 ATACAAAAAGAGTCCACATTACAT 23814 || || || ||||| || || ||| Sbjct 470158 ATTCAGAAGGAGTCTACTTTGCAT 470181 Score = 114 bits (126), Expect = 9e-21 Identities = 166/232 (72%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 ||||||||||| || || || || | || || ||||| |||||||| || ||||| | Sbjct 467954 AAAATGCAGATCTTTGTCAAGACATTGACTGGCAAAACCATCACTCTTGAGGTTGAGCCT 468013 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | |||||| |||| ||| |||| | || ||| || || |||||| | || || || Sbjct 468014 TCTGACACTATTGAGAATGTTAAGGC-CAAGATTCAAGATAAGGAAGGTATTCCACCTGA 468072 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 ||| || ||||| || ||||| ||||| || || || || | || ||||| |||||| Sbjct 468073 TCAGCAACGTTTGATCTTTGCTGGCAAGCAGCTTGAGGATGGCCGTACTTTGTCCGATTA 468132 Query 23787 CAACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 |||||| || || || || || | ||||| ||| | | | |||||||| Sbjct 468133 CAACATCCAGAAGGAATCAACTCTCCATTTGGTTCTGCGCCTCAGAGGAGGA 468184 Score = 95.1 bits (104), Expect = 8e-15 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || || | || || ||||| ||||| ||||||||||| | | Sbjct 470206 ATGCAGATCTTTGTCAAGACGTTGACTGGGAAAACTATCACGCTCGAAGTTGAACCTTCA 470265 Query 23671 GACACTGTTG-AAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | | |||| |||| | ||||| || || |||||| | || || || || Sbjct 470266 GACACAATCGAAAATGTTAAGGC-TAAAATCCAAGATAAGGAAGGTATTCCTCCCGACCA 470324 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 || ||| | || || |||||||| || || || || | || || | || || || Sbjct 470325 GCAACGTCTGATCTTCGCCGGCAAGCAGCTTGAGGATGGTCGTACGCTTTCAGACTATAA 470384 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 ||| |||||||| || || | |||||||||||| | | || |||||| Sbjct 470385 CATTCAAAAAGAATCTACCCTTCATTTAGTTTTACGTCTTCGTGGAGGA 470433 >seq15804 Length=1078 Score = 87.8 bits (96), Expect = 1e-12 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 23712 AGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACG 23771 |||| | || || ||||| ||| | ||||| |||||||||||||| |||| || | || Sbjct 626 AGGTATCCCACCTGATCAGCAGAGATTAATCTTTGCCGGCAAACAGTTGGAGGATGGTCG 567 Query 23772 CACTTTAGGCGATTACAACATACAAAAAGAGTCCACATTACATTTAGT 23819 ||||| ||||||||| || ||||| || ||||| |||||||| || Sbjct 566 TACTTTGTCCGATTACAATATCCAAAAGGAATCCACCTTACATTTGGT 519 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337890954510908