Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20magna_20[genbank_20GCA_5F001632505.1_202016-04-26] 28,801 sequences; 129,543,483 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq1253 141 2e-28 seq2866 132 1e-25 seq1847 105 2e-17 >seq1253 Length=553177 Score = 141 bits (156), Expect = 2e-28 Identities = 155/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 225511 TGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGC 225570 |||||||| ||||| || |||| |||||||||| |||||| | ||||| || |||||| Sbjct 468159 TGGAGAGTTGATTCCTTCTGGATGTTGTAATCGGACAAAGTACGGCCATCCTCAAGCTGC 468100 Query 225571 TTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTT 225630 || ||||| ||||| | ||||| || || || |||||||||||||| ||||| ||||| Sbjct 468099 TTGCCAGCAAAGATCAAACGTTGCTGATCAGGTGGAATACCTTCCTTATCTTGAATCTTG 468040 Query 225631 TGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTC 225690 ||| ||| || || ||||| || | || || || | ||||| || ||||| ||| Sbjct 468039 GCCTTAACATTCTCAATAGTGTCAGAAGGCTCAACCTCAAGAGTGATGGTTTTGCCAGTC 467980 Query 225691 AAAGTTTTTATGAACACTTGCATTTT 225716 || || || | || | |||||||| Sbjct 467979 AATGTCTTGACAAAGATCTGCATTTT 467954 Score = 136 bits (150), Expect = 9e-27 Identities = 143/188 (76%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 225511 TGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGC 225570 || || || ||||||||||| | || || || | | || | ||||| || |||||| Sbjct 470408 TGAAGGGTAGATTCTTTTTGAATGTTATAGTCTGAAAGCGTACGACCATCCTCAAGCTGC 470349 Query 225571 TTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTT 225630 || || |||||||| || ||||| |||||||| |||||||||||||| |||||||| || Sbjct 470348 TTGCCGGCGAAGATCAGACGTTGCTGGTCGGGAGGAATACCTTCCTTATCTTGGATTTTA 470289 Query 225631 TGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTC 225690 ||| ||| |||||| |||||||| | ||| || || | |||||| || || || ||| Sbjct 470288 GCCTTAACATTTTCGATTGTGTCTGAAGGTTCAACTTCGAGCGTGATAGTTTTCCCAGTC 470229 Query 225691 AAAGTTTT 225698 || || || Sbjct 470228 AACGTCTT 470221 Score = 134 bits (148), Expect = 3e-26 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || | ||| ||||| || |||||||| | || ||||||| |||||| | |||||| Sbjct 468771 AGAACTAAGTGAAGAGTCGACTCTTTTTGAATGTTATAATCGGACAAAGTACGACCATCT 468712 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || | |||||| || || ||||| || || || || || || ||||| |||||||||||| Sbjct 468711 TCCAACTGCTTTCCGGCAAAGATGAGACGCTGCTGATCTGGGGGAATGCCTTCCTTGTCT 468652 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 || || ||| ||| ||| ||||||||| || || | || || || | || || || Sbjct 468651 TGAATTTTTGCCTTGACATTTTCGATGGTATCCGATGGCTCAACCTCAAGGGTAATAGTT 468592 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || || |||||||| | ||| | ||||| Sbjct 468591 TTCCCGGTTAAAGTTTTCACGAAGATCTGCAT 468560 Score = 104 bits (114), Expect = 6e-17 Identities = 95/120 (79%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 ||||| | || || | ||| || ||||| ||||| || | || ||||| | ||| || Sbjct 469970 CGAAGACGTAGAACCAAGTGAAGGGTGGACTCTTTCTGAATGTTATAATCCGACAACGTA 469911 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | ||||| ||||||||||| |||||||||||||| ||||| || ||||||||||||||| Sbjct 469910 CGTCCATCCTCTAGCTGCTTGCCAGCGAAGATAAGACGTTGCTGATCGGGCGGAATACCT 469851 >seq2866 Length=178446 Score = 132 bits (146), Expect = 1e-25 Identities = 145/193 (75%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 225524 CTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGA 225583 |||| || | |||||||| | ||||| | || ||||| ||||| || ||||| || | Sbjct 176658 CTTTCTGAATGTTGTAATCAGATAAAGTGCGTCCGTCTTCCAGCTGTTTACCAGCAAAAA 176717 Query 225584 TAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTT 225643 | | ||||| |||||||| ||||||||||||||||||||||| || ||| ||| || Sbjct 176718 TCAAACGTTGCTGGTCGGGAGGAATACCTTCCTTGTCTTGGATTTTCGCCTTAACATTTT 176777 Query 225644 CGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGA 225703 ||||||| || || | || || || | ||||| ||||| ||||| || || || | || Sbjct 176778 CGATGGTATCAGAAGGCTCAACCTCAAGGGTGATGGTCTTACCCGTTAATGTCTTAACGA 176837 Query 225704 ACACTTGCATTTT 225716 | | |||||||| Sbjct 176838 AAATCTGCATTTT 176850 >seq1847 Length=14542 Score = 105 bits (116), Expect = 2e-17 Identities = 121/163 (74%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 7556 TTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGG 7615 |||| || |||||| | || || || || ||||| || ||||| ||| | |||||||| Sbjct 1476 TTTATAATGTTATTGTCACTGCCCACGCGTTTGTAATAATTTTTTTTATGGTTATGCCTA 1535 Query 7616 TTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGG 7675 |||| || || |||||||| || || | || ||||| ||| | || |||||||| || | Sbjct 1536 TTATAATTGGAGGTTTCGGGAACTGGCTAGTACCTTTGATGTTGGGAGCTCCTGACATAG 1595 Query 7676 CTTTTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCC 7718 | || || | | || ||| ||||||||||||| |||| || Sbjct 1596 CCTTCCCTCGATTAAATAATTTAAGTTTTTGATTTTTACCCCC 1638 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192091140707894