Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20magna_20[genbank_20GCA_5F001632505.1_202016-04-26] 28,801 sequences; 129,543,483 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq2190 86.0 5e-12 >seq2190 Length=2111488 Score = 86.0 bits (94), Expect = 5e-12 Identities = 120/166 (72%), Gaps = 2/166 (1%) Strand=Plus/Minus Query 29713 TAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGG 29772 ||| || ||||||||||| |||||| | || || | ||| |||||||| ||||||||||| Sbjct 1172806 TAGACCAGTGACGTGAGCTATCATGCATGTCAGCAAAGAATAGCTGGCTATGTTAAAGGG 1172747 Query 29773 CACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCC-GTCGC 29831 || || | ||||| || | || || || || | ||||| || || || || | || Sbjct 1172746 AACACCTAAACCCATATCAGCAGATCTTTGATACATTTGGCAAGACAGTTCACCATTTGC 1172687 Query 29832 TCACGTAAAACTGACACATGGCATGGCACGGAGGAAGGGCCATGAG 29877 | || || ||||| || | ||||||||| || | ||||| || Sbjct 1172686 T-ACATAGAACTGGGCCAAGCAATGGCACGGTGGTAACGCCATTAG 1172642 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406020631766686