Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20magna_20[genbank_20GCA_5F001632505.1_202016-04-26] 28,801 sequences; 129,543,483 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq1005 187 2e-42 >seq1005 Length=1646370 Score = 187 bits (206), Expect = 2e-42 Identities = 259/360 (72%), Gaps = 2/360 (1%) Strand=Plus/Plus Query 4548 CACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAAT 4607 || |||||||| || |||| |||||| ||||| |||||||||||| || || || | | Sbjct 377505 CATGCAAAATCGCAGTGCAGACCTTCATCTCTAGAAATCAGTTCGTTCGAGAATGTCAGT 377564 Query 4608 CCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAAT 4667 || ||||| ||||||| |||||||||||||||||| || ||||| || ||||| || ||| Sbjct 377565 CCTGGCATCAAACCTCGCTTTTTAAGCCAAAATATTGCAGCAAAGGAACCAGAGAAAAAT 377624 Query 4668 ATGCCTTCTACGGCGGCAAACGCTACTAATC-GGGACCCGAACGAGCTGGCTTTGTCTTT 4726 |||||||| || || ||||| ||||| | || || || | || || ||| Sbjct 377625 ATGCCTTCCACAGCAGCAAAAGCTACAATTCTTTCACTGTAAGGTGC-ATCTCTGTTACC 377683 Query 4727 AATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTT 4786 ||||||| | | ||||||| ||| || ||| ||| || || ||||| | | |||||| Sbjct 377684 AATCCATCTCATGGCCCAGTCAGCCTTCTTCGCAACACAAGGCATTGTCTCAACAGCGTT 377743 Query 4787 AAATAATTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACAT 4846 || | ||| | ||||| | || | || || || || |||| ||||| ||||| Sbjct 377744 GAAAAGTTTCATCCTTTCAGCAGAATCCTTGATGTAGGTTTCAATTAACAGGCTGTACAT 377803 Query 4847 TTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTAC 4906 || || || |||||||| || || || || || || || || || | ||| || | ||| Sbjct 377804 CTCTGAGTGGATATTTTCCATGGCTATTTGGAAACCATAGAAACAGCGAGCCTCAGGTAC 377863 Score = 93.3 bits (102), Expect = 4e-14 Identities = 81/101 (80%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 5046 TCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGTACATAGACCAAATATCA 5105 |||||||||||| |||||||||| || ||||| |||||||||||||| |||||||||| Sbjct 378129 TCAACTTCTTCAGCAGTCCAAAATGAGGCTTCAGCTTTTTTGTACATTTGCCAAATATCA 378188 Query 5106 GGATACTGAATCGGAAGTATGACAAATCTGTTGTCGTTAGG 5146 ||||||| || || | | ||||||| | || ||||| Sbjct 378189 TGATACTGGATAGGGAACAACACAAATCGGCTGGGATTAGG 378229 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426899700385733