Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20magna_20[genbank_20GCA_5F001632505.1_202016-04-26] 28,801 sequences; 129,543,483 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq1005 210 3e-49 seq2244 145 1e-29 >seq1005 Length=1646370 Score = 210 bits (232), Expect = 3e-49 Identities = 267/366 (73%), Gaps = 11/366 (3%) Strand=Plus/Plus Query 48123 AAATGTTTAAACATTAAACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAAT 48182 |||||||| ||||| | ||||||||||| || || ||||||||||||||| ||| | | Sbjct 377487 AAATGTTTGAACATAACGCATGCAAAATCGCAGTGCAGACCTTCATCTCTAGAAATCAGT 377546 Query 48183 TCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCG 48242 ||||| || ||||| || || ||||| | || || ||||| |||||||||||||| || Sbjct 377547 TCGTTCGAGAATGTCAGTCCTGGCATCAAACCTCGCTTTTTAAGCCAAAATATTGCAGCA 377606 Query 48243 AAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAA 48302 || || ||||| || ||||||||||| || || ||||| || || ||| || | |||| Sbjct 377607 AAGGAACCAGAGAAAAATATGCCTTCCACAGCAGCAAAAGCTACAATTCTTTCACTGTAA 377666 Query 48303 CTGGCTTC---GTTGTGTATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGC 48359 || || ||| ||||| | ||||| |||||||||||| ||||||||| Sbjct 377667 GGTGCATCTCTGTTACCAATCCATCTCATGGCCCAGTCAGCCTTCTTCGCAACACAAGGC 377726 Query 48360 ATTGTTTCTATAGCATTAAAGAGAAAGttt----ttttCATTGCTATCTTTAACGTAAGT 48415 ||||| || | ||| || | ||||||| ||||| ||| || | ||| || Sbjct 377727 ATTGTCTCAACAGCGTTGA----AAAGTTTCATCCTTTCAGCAGAATCCTTGATGTAGGT 377782 Query 48416 ATCTATTAAAAGACTATACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTA 48475 || ||||| || || ||||| || ||||| |||||||| || || || || || || || Sbjct 377783 TTCAATTAACAGGCTGTACATCTCTGAGTGGATATTTTCCATGGCTATTTGGAAACCATA 377842 Query 48476 AAAACA 48481 ||||| Sbjct 377843 GAAACA 377848 >seq2244 Length=477090 Score = 145 bits (160), Expect = 1e-29 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 77924 TTCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCACATCAATGA 77983 |||||| || ||||||||| |||| | || || || |||||||| || ||||| | || Sbjct 404251 TTCAAACTCTTCTCCCCAAGCATCGGCTAAACCCGGACATTCATTCGGACACATAAGAGA 404310 Query 77984 CCAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAA 78043 ||| || || ||| | ||| || | ||| || |||||||| ||||| ||||| ||| Sbjct 404311 CCACTCTCCGTCTGATTCAACGCGCTGCATGAAAAGATCAGGAATCCAAAGAGCGTAAAA 404370 Query 78044 TAGATCTCGGGTTCTATGTTCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCAT 78103 | || || | | | ||||| ||||| ||||||||||| ||||| ||||| || | Sbjct 404371 CAAGTCACGTGCACGGTTCTCTTCTTTTCCGGTATTCTTTTTTAGATCAAGAAATTCAAA 404430 Query 78104 AATATCAGAATGCCATGGTTCTAGATATATTGCCATAACTCCAGGTCG 78151 | ||| ||||||||||||||||| || ||||| | | |||| || || Sbjct 404431 TACATCCGAATGCCATGGTTCTAGGTAAATTGCAAAAGCTCCTGGACG 404478 Score = 105 bits (116), Expect = 9e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 78152 TTTATTACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAAT 78211 ||| ||||| ||||| || | || | || |||||||| || || | | |||||| | Sbjct 404570 TTTGTTACCACCCTGGTCCACGTAACGTGCAGTGTTATTGTATACGCGTAGCATTGGGAC 404629 Query 78212 AATACCGTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACT 78271 | |||||| ||| ||||||||||||| | ||||||||||| | || || || | Sbjct 404630 TAGACCGTTCGATATTCCATTTGTTCCGGCGATATAACTTCCGGTGGCCCGTATGCAATG 404689 Query 78272 AATGGATATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATC 78331 ||| | || || || || || || ||||||| || || | || ||||| || Sbjct 404690 TATGTTGAGGCCAATACCACCAGCTGATTTGGATATTATGGCACATTGCTTTAATGTTTC 404749 Query 78332 GTAGATACCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCT 78379 || ||||| || || |||||||| |||| ||||||| |||||||| Sbjct 404750 ATAAATACCATCAATGCTGTCATCTTTCATAGTAAGAAGGAAACAGCT 404797 Score = 104 bits (114), Expect = 3e-17 Identities = 113/150 (75%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 77390 AGCTAGTTCACAACTCGCTTCCAATGCTCCGTAATAAATTGTTTCGAAAATCTTCTTATT 77449 ||| || ||||| | ||| ||||| ||||||||||| ||||||||||| | |||||| Sbjct 403507 AGCGAGCTCACACGAAGATTCTAATGCGCCGTAATAAATCGTTTCGAAAATTTGCTTATT 403566 Query 77450 GAGATCTTGTGCTTCAATACTATCAAACGGATAATGTAAAAGAATAAAGGCATCTGCTAA 77509 || ||| ||||| |||||||||||||| | | || ||||| ||||| || || Sbjct 403567 TAGCAGTTGCGCTTCTTCGCTATCAAACGGATAGCGCATTAGGATAAAAGCATCAGCCAA 403626 Query 77510 TCCCTGAACTCCAATACCAATAGGTCTATG 77539 || ||||||||||| || || || | ||| Sbjct 403627 GCCTTGAACTCCAATTCCTATCGGACGATG 403656 Score = 100 bits (110), Expect = 4e-16 Identities = 115/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 78753 TTTTTTGTTTCCTTGTGTAGATTAGATACAGCTATTCTTGCAGCTAGAATAGCATAATCA 78812 ||||| ||||| ||||| ||||| || |||||||| | ||||| || || ||||||||| Sbjct 405376 TTTTTAGTTTCTTTGTGAAGATTCGAAACAGCTATGCGAGCAGCCAGGATTGCATAATCA 405435 Query 78813 GGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCCGCTAAAATATCTAACTCTATAGTT 78872 ||||| | ||||| || || || ||||||| || | | |||| | || | |||| Sbjct 405436 GGATGCTTAGTAGTCATTGTAGCAGCAGTTTCTGCAGCAAGATTATCAAGTTCAACAGTT 405495 Query 78873 GTGACCCCATTATATAGTCCTTGAATAACTTTCAT 78907 || || ||| ||| || || | ||||||||||| Sbjct 405496 GTCACACCAGGATAGAGGCCATTTATAACTTTCAT 405530 Score = 91.5 bits (100), Expect = 2e-13 Identities = 107/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 76849 TCCATCCGTAGAAATGCATGCTTGTCAGTTTGGAATAACTAGGATCGGCTATATGAATAT 76908 |||| | ||||| ||||| |||| ||| |||| | || || || || || || | Sbjct 402737 TCCAGGCATAGAAGTGCATTGAAGTCAATTTTCCATAATTCGGTTCTGCAATGTGTATGT 402796 Query 76909 TCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCT 76968 ||| ||||||||||||||||||||||| || | |||||| ||||| || |||||| Sbjct 402797 TCAATGACTGACTTTGATCGATGAAAGCACCACGATCAGCAGCCATCTTAATAATGACGC 402856 Query 76969 TTTGAGGAATTTCCCAAATAGTTTT 76993 || ||||||||||| | ||||| Sbjct 402857 GCTGTGGAATTTCCCATACTGTTTT 402881 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694418710548640