Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20magna_20[genbank_20GCA_5F001632505.1_202016-04-26] 28,801 sequences; 129,543,483 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq1005 226 4e-54 seq2244 154 2e-32 >seq1005 Length=1646370 Score = 226 bits (250), Expect = 4e-54 Identities = 277/377 (73%), Gaps = 11/377 (3%) Strand=Plus/Plus Query 46612 AAATGTTTAAACATTAAACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAAT 46671 |||||||| ||||| | ||||||||||| || || || |||||||||||| ||| | | Sbjct 377487 AAATGTTTGAACATAACGCATGCAAAATCGCAGTGCAGACCTTCATCTCTAGAAATCAGT 377546 Query 46672 TCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCG 46731 ||||| || ||||| || || ||||| | || |||||||| ||||||||||| || || Sbjct 377547 TCGTTCGAGAATGTCAGTCCTGGCATCAAACCTCGCTTTTTAAGCCAAAATATTGCAGCA 377606 Query 46732 AAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAA 46791 || || ||||| || ||||||||||| ||||| || || || |||| ||| || | |||| Sbjct 377607 AAGGAACCAGAGAAAAATATGCCTTCCACAGCAGCAAAAGCTACAATTCTTTCACTGTAA 377666 Query 46792 CTGGCATC---ATTATGAATCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGC 46848 ||||| ||| |||||| || ||||| |||||||| ||| ||||||||| Sbjct 377667 GGTGCATCTCTGTTACCAATCCATCTCATGGCCCAGTCAGCCTTCTTCGCAACACAAGGC 377726 Query 46849 ATTGTTTCTATAGCATTAAAGAGAAAGttt----ttttCATCACTATCTTTAACATATGT 46904 ||||| || | ||| || | ||||||| ||||| || ||| || | || || Sbjct 377727 ATTGTCTCAACAGCGTTGA----AAAGTTTCATCCTTTCAGCAGAATCCTTGATGTAGGT 377782 Query 46905 ATCTATTAAAAGACTATACATTTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTA 46964 || ||||| || || ||||| ||||| || || ||||| || || || || || || || Sbjct 377783 TTCAATTAACAGGCTGTACATCTCTGAGTGGATATTTTCCATGGCTATTTGGAAACCATA 377842 Query 46965 AAAACATCTTGCTTCAG 46981 ||||| | || |||| Sbjct 377843 GAAACAGCGAGCCTCAG 377859 >seq2244 Length=477090 Score = 154 bits (170), Expect = 2e-32 Identities = 169/225 (75%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 76507 TGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGG 76566 |||||| || |||||| || ||||||||| |||| | ||||| |||||||||||||| Sbjct 404239 TGTATACAAAGCTTCAAACTCTTCTCCCCAAGCATCGGCTAAACCCGGACATTCATTCGG 404298 Query 76567 ACACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCA 76626 |||||| | |||||||| || ||| | ||| || | ||| || |||||||| ||||| Sbjct 404299 ACACATAAGAGACCACTCTCCGTCTGATTCAACGCGCTGCATGAAAAGATCAGGAATCCA 404358 Query 76627 TAGAGCAATAAATAGATCTCGGGTTCTACGTTCTTCATTTCCTGTATTCTTTTTAAGATC 76686 ||||| ||| | || || | | ||||| ||||| ||||||||||| ||||| Sbjct 404359 AAGAGCGTAAAACAAGTCACGTGCACGGTTCTCTTCTTTTCCGGTATTCTTTTTTAGATC 404418 Query 76687 TAGGAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGC 76731 || || || | | ||| ||||||||||||||||| || || || Sbjct 404419 AAGAAATTCAAATACATCCGAATGCCATGGTTCTAGGTAAATTGC 404463 Score = 114 bits (126), Expect = 2e-20 Identities = 131/176 (74%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 77000 GCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTGTATGTT 77059 ||||| |||||||| || || ||||||||||||||||| ||||| | | ||||||||| Sbjct 404886 GCATTGAACAATGTTGGGGAGGCATGAGTGAACCATTTCTCAGACAACAAGTTGTATGTT 404945 Query 77060 TCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAACATATGC 77119 ||||| | ||||| | ||| | ||| || || |||| || | ||||| ||| || Sbjct 404946 TCAATGGCAGCTTCCAAATCATCTCCATGTATGCCAACAGACACTCTCATCATCATGTGT 405005 Query 77120 TGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGT 77175 || || || ||||||| || | |||||||||||||| ||| | |||| ||| Sbjct 405006 TGTGGACGCTCTACAGGTTTTCCAGAAATTTTCAACAAGTAAGATCTCTCCAGAGT 405061 Score = 102 bits (112), Expect = 1e-16 Identities = 119/161 (74%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 77348 TTTTTTGTTTCCTTGTGTAGATTCGATACGGCTATTCTAGCAGCTAGAATTGCATAGTCA 77407 ||||| ||||| ||||| |||||||| || ||||| | |||||| || |||||||| ||| Sbjct 405376 TTTTTAGTTTCTTTGTGAAGATTCGAAACAGCTATGCGAGCAGCCAGGATTGCATAATCA 405435 Query 77408 GGATGTTGTGTAGTGCAGGTGGCTGCTATTTCTGCCGCTAAAGTATCTAATTCTATAGTA 77467 ||||| | ||||| || || || ||||||| || | | |||| | ||| | ||| Sbjct 405436 GGATGCTTAGTAGTCATTGTAGCAGCAGTTTCTGCAGCAAGATTATCAAGTTCAACAGTT 405495 Query 77468 GTAACTCCGTTATATAGCCCTTGAATAACTTTCATGGCTAT 77508 || || || ||| || || | ||||||||||| | ||| Sbjct 405496 GTCACACCAGGATAGAGGCCATTTATAACTTTCATAGTTAT 405536 Score = 100 bits (110), Expect = 4e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 76747 TTTATTACCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAAT 76806 ||| ||||| ||||| || | || | ||||||||||| || || | | |||||| | Sbjct 404570 TTTGTTACCACCCTGGTCCACGTAACGTGCAGTGTTATTGTATACGCGTAGCATTGGGAC 404629 Query 76807 AATGCCGTTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACT 76866 | ||||| ||| | ||||||||||| | ||||||||||| || || || | Sbjct 404630 TAGACCGTTCGATATTCCATTTGTTCCGGCGATATAACTTCCGGTGGCCCGTATGCAATG 404689 Query 76867 AATAGATAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTC 76926 || ||||| || || || || ||| || |||| ||||| | || ||||| || Sbjct 404690 TATGTTGAGGCCAATACCACCAGCTGATTTGGATATTATGGCACATTGCTTTAATGTTTC 404749 Query 76927 ATAGATGCCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCT 76974 ||| || || || || || ||||| |||| ||||||| |||||||| Sbjct 404750 ATAAATACCATCAATGCTGTCATCTTTCATAGTAAGAAGGAAACAGCT 404797 Score = 96.9 bits (106), Expect = 5e-15 Identities = 100/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 76004 TCTAACGCACCGTAATAAATTGTTTCGAAAATCTTCTTATTAAGATCTTGCGCTTCAAGA 76063 ||||| || ||||||||||| ||||||||||| | |||||| || ||||||||| Sbjct 403526 TCTAATGCGCCGTAATAAATCGTTTCGAAAATTTGCTTATTTAGCAGTTGCGCTTCTTCG 403585 Query 76064 CTATCAAAAGGATAATGTAAAAGAATAAATGCATCTGCTAGTCCCTGAACTCCAATACCA 76123 |||||||| ||||| | | || ||||| ||||| || | || ||||||||||| || Sbjct 403586 CTATCAAACGGATAGCGCATTAGGATAAAAGCATCAGCCAAGCCTTGAACTCCAATTCCT 403645 Query 76124 ATAGGTCTATG 76134 || || | ||| Sbjct 403646 ATCGGACGATG 403656 Score = 91.5 bits (100), Expect = 2e-13 Identities = 107/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 75444 TCCATCCGTAGAAATGCATGCTTGTTAGTTTGGAATAACTCGGATCGGCTATATGAATAT 75503 |||| | ||||| ||||| || | ||| |||| |||| || || || || || | Sbjct 402737 TCCAGGCATAGAAGTGCATTGAAGTCAATTTTCCATAATTCGGTTCTGCAATGTGTATGT 402796 Query 75504 TCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCT 75563 ||| ||||||||||||||||||||||| || | |||||| ||||| || |||||| Sbjct 402797 TCAATGACTGACTTTGATCGATGAAAGCACCACGATCAGCAGCCATCTTAATAATGACGC 402856 Query 75564 TTTGAGGAATTTCCCAAATAGTTTT 75588 || ||||||||||| | ||||| Sbjct 402857 GCTGTGGAATTTCCCATACTGTTTT 402881 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712677734704320