Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20magna_20[genbank_20GCA_5F001632505.1_202016-04-26] 28,801 sequences; 129,543,483 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq1253 149 1e-30 seq2866 96.9 8e-15 >seq1253 Length=553177 Score = 149 bits (164), Expect = 1e-30 Identities = 157/205 (77%), Gaps = 4/205 (2%) Strand=Plus/Minus Query 151902 TGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAG--GC 151959 |||||||| ||||||||||| ||||| ||||||| ||||| | |||||||| | || Sbjct 468762 TGAAGAGTCGACTCTTTTTGAATGTTATAATCGGACAAAGTACGACCATCTTCCAACTGC 468703 Query 151960 TTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTT 152019 ||| ||||| ||||| || | |||||| || | | || |||||||| |||||||||| Sbjct 468702 TTT--CCGGCAAAGATGAGACGCTGCTGATCTGGGGGAATGCCTTCCTTGTCTTGAATTT 468645 Query 152020 TTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCG 152079 || |||||| | || | | | || || ||| || ||||| ||||||||||| || | Sbjct 468644 TTGCCTTGACATTTTCGATGGTATCCGATGGCTCAACCTCAAGGGTAATAGTTTTCCCGG 468585 Query 152080 TGAGAGTCTTCACGAAGACCTGCAT 152104 | | ||| |||||||||| |||||| Sbjct 468584 TTAAAGTTTTCACGAAGATCTGCAT 468560 Score = 120 bits (132), Expect = 7e-22 Identities = 161/224 (72%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943 ||||| | || || | ||| ||||| || || || |||||||||||||||| ||||| Sbjct 468177 CTGAGGCGCAGAACCAAATGGAGAGTTGATTCCTTCTGGATGTTGTAATCGGACAAAGTA 468118 Query 151944 CTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 | ||||| || || || || || ||||| | | ||||| || | | || ||| Sbjct 468117 CGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAAACGTTGCTGATCAGGTGGAATACCT 468058 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGA 152063 ||||| |||||||| || || ||| |||| | |||| ||| ||| || |||||| Sbjct 468057 TCCTTATCTTGAATCTTGGCCTTAACATTCTCAATAGTGTCAGAAGGCTCAACCTCAAGA 467998 Query 152064 GTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 || || |||||||| || | ||||| || |||| ||||||||| Sbjct 467997 GTGATGGTTTTGCCAGTCAATGTCTTGACAAAGATCTGCATTTT 467954 Score = 107 bits (118), Expect = 4e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 151901 ATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCT 151960 |||||| ||||| |||||||| ||||| || || | | || | ||||| || || Sbjct 470409 ATGAAGGGTAGATTCTTTTTGAATGTTATAGTCTGAAAGCGTACGACCATCCTCAAGCTG 470350 Query 151961 TTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTT 152020 || ||||||||||| || | |||||||| | | || |||||||| ||||| ||||| Sbjct 470349 CTTGCCGGCGAAGATCAGACGTTGCTGGTCGGGAGGAATACCTTCCTTATCTTGGATTTT 470290 Query 152021 TTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGT 152080 || ||| | || | |||||||| || ||||| || || |||||||| || || Sbjct 470289 AGCCTTAACATTTTCGATTGTGTCTGAAGGTTCAACTTCGAGCGTGATAGTTTTCCCAGT 470230 Query 152081 GAGAGTCTTCACGAAGACCTGCAT 152104 | ||||| || |||| |||||| Sbjct 470229 CAACGTCTTGACAAAGATCTGCAT 470206 >seq2866 Length=178446 Score = 96.9 bits (106), Expect = 8e-15 Identities = 137/193 (71%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 151915 CTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCGGCGAAGA 151974 |||| || ||||||||||| | |||||| | || ||||| || ||| || || || | Sbjct 176658 CTTTCTGAATGTTGTAATCAGATAAAGTGCGTCCGTCTTCCAGCTGTTTACCAGCAAAAA 176717 Query 151975 TAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCT 152034 | | | |||||||| | | || |||||||| ||||| ||||| || ||| | | Sbjct 176718 TCAAACGTTGCTGGTCGGGAGGAATACCTTCCTTGTCTTGGATTTTCGCCTTAACATTTT 176777 Query 152035 CTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGA 152094 | | | | || ||| ||| || ||||| || || || || ||||| | ||||| |||| Sbjct 176778 CGATGGTATCAGAAGGCTCAACCTCAAGGGTGATGGTCTTACCCGTTAATGTCTTAACGA 176837 Query 152095 AGACCTGCATTTT 152107 | | ||||||||| Sbjct 176838 AAATCTGCATTTT 176850 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153395025341471