Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20magna_20[genbank_20GCA_5F001632505.1_202016-04-26] 28,801 sequences; 129,543,483 total letters Query= NC_031761.1 Length=131855 Score E Sequences producing significant alignments: (Bits) Value seq1253 87.8 2e-12 >seq1253 Length=553177 Score = 87.8 bits (96), Expect = 2e-12 Identities = 90/116 (78%), Gaps = 4/116 (3%) Strand=Plus/Plus Query 111213 CGATCAACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGAT--TCTAAAACTATGGCC 111270 ||| ||||| | ||||||| ||| || || |||||||||||| | || |||| || Sbjct 469468 CGACCAACAGCGACTTATTTTTGCTGGAAAGCAATTGGAAGATGGACGAACGCTAT--CC 469525 Query 111271 GATTATAATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 || || ||||| || ||||| |||||||| ||||| || ||||||||||| || || Sbjct 469526 GACTACAATATTCAGAAAGAGTCTACACTGCATTTGGTATTGCGTCTGCGAGGAGG 469581 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421663139127976