Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20magna_20[genbank_20GCA_5F001632505.1_202016-04-26] 28,801 sequences; 129,543,483 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq1253 168 1e-36 seq2866 163 6e-35 seq16310 96.9 7e-15 seq4782 89.7 1e-12 seq3275 89.7 1e-12 seq2443 89.7 1e-12 seq1764 89.7 1e-12 seq1005 89.7 1e-12 seq56 89.7 1e-12 seq15804 87.8 4e-12 >seq1253 Length=553177 Score = 168 bits (186), Expect = 1e-36 Identities = 174/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||| || || ||||| |||||||| || || || || || ||||||||||||| Sbjct 470205 ACCACCTCGGAGTCGAAGCACCAGATGCAAAGTAGACTCCTTCTGAATGTTGTAGTCAGA 470146 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 | ||| || ||||| || | || || ||||||||||| | ||| || || || || Sbjct 470145 CAACGTACGCCCATCTTCCAACTGCTTTCCGGCAAAGATGAGACGCTGCTGATCTGGTGG 470086 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 |||||||||||||| || ||||| ||||||||| | || || || ||||| | ||| || Sbjct 470085 GATACCCTCCTTGTCCTGAATCTTAGCTTTTACGTTTTCTATGGTATCCGATGGTTCAAC 470026 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||||||| || || || |||||||| || || ||||| || ||||| Sbjct 470025 TTCGAGAGTAATGGTTTTCCCCGTCAAGGTTTTCACGAAGATTTGCAT 469978 Score = 165 bits (182), Expect = 2e-35 Identities = 169/221 (76%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 282882 AGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGG 282941 ||||| || |||| ||| | || ||| || ||||||||||| || | | || ||| Sbjct 468174 AGGCGCAGAACCAAATGGAGAGTTGATTCCTTCTGGATGTTGTAATCGGACAAAGTACGG 468115 Query 282942 CCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCC 283001 |||||||| || || || || ||||||||||||||||| || ||| |||||||| ||| Sbjct 468114 CCATCCTCAAGCTGCTTGCCAGCAAAGATCAAACGTTGCTGATCAGGTGGAATACCTTCC 468055 Query 283002 TTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTG 283061 || ||||| ||||| || || || | || |||||||| |||| || || || |||||| Sbjct 468054 TTATCTTGAATCTTGGCCTTAACATTCTCAATAGTGTCAGAAGGCTCAACCTCAAGAGTG 467995 Query 283062 ATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102 || || || || ||||| ||||| || || ||||||||||| Sbjct 467994 ATGGTTTTGCCAGTCAATGTCTTGACAAAGATCTGCATTTT 467954 Score = 111 bits (122), Expect = 3e-19 Identities = 139/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 |||||||| ||||| || || | | || || ||||| || | || || ||||||||| Sbjct 468750 TCTTTTTGAATGTTATAATCGGACAAAGTACGACCATCTTCCAACTGCTTTCCGGCAAAG 468691 Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028 || | ||| || || || ||||| || ||||||||||| || ||||| || || | Sbjct 468690 ATGAGACGCTGCTGATCTGGGGGAATGCCTTCCTTGTCTTGAATTTTTGCCTTGACATTT 468631 Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACG 283088 ||||| || ||||| | || || || || || || || || || || ||||| || ||| Sbjct 468630 TCGATGGTATCCGATGGCTCAACCTCAAGGGTAATAGTTTTCCCGGTTAAAGTTTTCACG 468571 Query 283089 AATATCTGCAT 283099 || |||||||| Sbjct 468570 AAGATCTGCAT 468560 Score = 100 bits (110), Expect = 6e-16 Identities = 97/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||| ||||| ||||| |||||||| | || || |||||||||||||| || | Sbjct 469183 CCACCGCGCAGACGAAGAACCAGATGAAGAGTCGACTCCTTTTGGATGTTGTAATCCGAT 469124 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 | || || |||||||| |||||||| || ||||||||||||||||| || ||| ||| Sbjct 469123 AAGGTACGACCATCCTCCAGTTGTTTACCAGCAAAGATCAAACGTTGCTGATCAGGAGGA 469064 Query 282993 ATACC 282997 || || Sbjct 469063 ATTCC 469059 Score = 96.9 bits (106), Expect = 7e-15 Identities = 85/106 (80%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 282994 TACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTT 283053 |||| || ||||||||||| || || || || | ||||| ||||| |||| || |||| Sbjct 469290 TACCTTCTTTGTCTTGGATTTTGGCCTTAACATTCTCGATGGTGTCGGAAGGCTCAACTT 469231 Query 283054 CGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 | |||||||| || || || ||||||||||||||||| || ||||| Sbjct 469230 CAAGAGTGATGGTTTTGCCAGTCAAAGTCTTAACGAAAATTTGCAT 469185 >seq2866 Length=178446 Score = 163 bits (180), Expect = 6e-35 Identities = 152/193 (79%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 282910 CTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGA 282969 |||| || |||||||| |||| | ||||| || || || || ||||| || ||||| | Sbjct 176658 CTTTCTGAATGTTGTAATCAGATAAAGTGCGTCCGTCTTCCAGCTGTTTACCAGCAAAAA 176717 Query 282970 TCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTAT 283029 |||||||||| ||||| |||||||| |||||||||||||| || || || || | | Sbjct 176718 TCAAACGTTGCTGGTCGGGAGGAATACCTTCCTTGTCTTGGATTTTCGCCTTAACATTTT 176777 Query 283030 CGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGA 283089 |||| || || |||| || || || || ||||| ||||||||||| || |||||||||| Sbjct 176778 CGATGGTATCAGAAGGCTCAACCTCAAGGGTGATGGTCTTACCCGTTAATGTCTTAACGA 176837 Query 283090 ATATCTGCATTTT 283102 | ||||||||||| Sbjct 176838 AAATCTGCATTTT 176850 >seq16310 Length=633 Score = 96.9 bits (106), Expect = 7e-15 Identities = 85/106 (80%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 282994 TACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTT 283053 |||| || ||||||||||| || ||||| || | |||||||||||||||| || || | Sbjct 317 TACCTTCTTTGTCTTGGATTTTGGCTTTAACATTTTCGATAGTGTCCGAAGGCTCCACCT 376 Query 283054 CGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 | ||||| || || || |||||||| ||||| ||||| || ||||| Sbjct 377 CAAGAGTAATGGTTTTGCCCGTCAATGTCTTGACGAAAATTTGCAT 422 >seq4782 Length=950 Score = 89.7 bits (98), Expect = 1e-12 Identities = 54/57 (95%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCG 168810 |||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||| Sbjct 647 TAGTATAGTGGTCAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTCCCCG 703 >seq3275 Length=417686 Score = 89.7 bits (98), Expect = 1e-12 Identities = 54/57 (95%), Gaps = 0/57 (0%) Strand=Plus/Minus Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCG 168810 |||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||| Sbjct 348925 TAGTATAGTGGTCAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTCCCCG 348869 >seq2443 Length=88552 Score = 89.7 bits (98), Expect = 1e-12 Identities = 54/57 (95%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCG 168810 |||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||| Sbjct 71634 TAGTATAGTGGTCAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTCCCCG 71690 >seq1764 Length=448002 Score = 89.7 bits (98), Expect = 1e-12 Identities = 54/57 (95%), Gaps = 0/57 (0%) Strand=Plus/Minus Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCG 168810 |||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||| Sbjct 177891 TAGTATAGTGGTCAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTCCCCG 177835 Score = 89.7 bits (98), Expect = 1e-12 Identities = 54/57 (95%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCG 168810 |||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||| Sbjct 254498 TAGTATAGTGGTCAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTCCCCG 254554 >seq1005 Length=1646370 Score = 89.7 bits (98), Expect = 1e-12 Identities = 54/57 (95%), Gaps = 0/57 (0%) Strand=Plus/Minus Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCG 168810 |||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||| Sbjct 1624936 TAGTATAGTGGTCAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTCCCCG 1624880 >seq56 Length=80015 Score = 89.7 bits (98), Expect = 1e-12 Identities = 54/57 (95%), Gaps = 0/57 (0%) Strand=Plus/Minus Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCG 168810 |||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||| Sbjct 64528 TAGTATAGTGGTCAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTCCCCG 64472 >seq15804 Length=1078 Score = 87.8 bits (96), Expect = 4e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| ||||| || |||| |||||| ||| ||| |||||||| ||||| || | Sbjct 500 ACCACCACGAAGGCGGAGCACCAAATGTAAGGTGGATTCCTTTTGGATATTGTAATCGGA 559 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 | || || |||||||| | ||||| ||||||||||| || | || || ||| || Sbjct 560 CAAAGTACGACCATCCTCCAACTGTTTGCCGGCAAAGATTAATCTCTGCTGATCAGGTGG 619 Query 282992 AATACC 282997 ||||| Sbjct 620 GATACC 625 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046352939823854