Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20magna_20[genbank_20GCA_5F001632505.1_202016-04-26] 28,801 sequences; 129,543,483 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq1005 168 7e-37 seq18034 147 2e-30 seq7257 138 1e-27 >seq1005 Length=1646370 Score = 168 bits (186), Expect = 7e-37 Identities = 264/378 (70%), Gaps = 10/378 (3%) Strand=Plus/Plus Query 23491 AAATACTTAAACAATAAACATGCAAAATCACAATGTAGGCCTTCATCCCTACTAATCAAT 23550 |||| || |||| | ||||||||||| || || || |||||||| ||| ||||| | Sbjct 377487 AAATGTTTGAACATAACGCATGCAAAATCGCAGTGCAGACCTTCATCTCTAGAAATCAGT 377546 Query 23551 TCATTAGAAAATGTTAATCCTGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCA 23610 || || || ||||| | ||||||||| || ||||| ||||||| |||||||||||||||| Sbjct 377547 TCGTTCGAGAATGTCAGTCCTGGCATCAAACCTCGCTTTTTAAGCCAAAATATTGCAGCA 377606 Query 23611 AATGATCCGGAAAAGAAAATACCCTCAACAGCCGCAAAGGCCACAAGACGTGTACCAAAT 23670 || || || || || || || || || ||||| ||||| || |||| | | || | Sbjct 377607 AAGGAACCAGAGAAAAATATGCCTTCCACAGCAGCAAAAGCTACAATTCTTTCACTGTAA 377666 Query 23671 GTTGCATTATAATCAGAAATCCAtttttttGTCCAATTAGCCTTCAATTTTACACACTCA 23730 | ||||| | | ||||||| | | | ||| | ||||||| ||||| Sbjct 377667 GGTGCATCTCTGTTACCAATCCATCTCATGGCCCAGTCAGCCTTCTTCGCAACACAAGGC 377726 Query 23731 ATTGTTTCAATTGCTTTTAAGAGAAAAGTTT-----TTTCTTCATTATCTGTTATATATG 23785 ||||| |||| || || ||||||||| |||| || ||| | || || | Sbjct 377727 ATTGTCTCAACAGCGTT-----GAAAAGTTTCATCCTTTCAGCAGAATCCTTGATGTAGG 377781 Query 23786 TATCAATTAGTAAACTATACATTTCAGAATGAATATTTTCAATAGCAATCTGAAACCCAT 23845 | ||||||| | || ||||| || || || |||||||| || || || || || |||| Sbjct 377782 TTTCAATTAACAGGCTGTACATCTCTGAGTGGATATTTTCCATGGCTATTTGGAAACCAT 377841 Query 23846 AAAAACATCTAGCTTCAG 23863 | ||||| | ||| |||| Sbjct 377842 AGAAACAGCGAGCCTCAG 377859 >seq18034 Length=244 Score = 147 bits (162), Expect = 2e-30 Identities = 164/215 (76%), Gaps = 8/215 (4%) Strand=Plus/Plus Query 8404 CCTCCCGGGTTCAAGCTATTCTCCTGCCTCAGCCTCCAGAGTAGCTGGGATT--AC-AGG 8460 ||||| | ||||||| |||||||| ||||||||||| || | ||||||||| || ||| Sbjct 2 CCTCCTGAGTTCAAGTGATTCTCCTTCCTCAGCCTCC-GAATTGCTGGGATTCTACTAGG 60 Query 8461 CAAA----AGCCACCACGCCAAGCTAATTTTTGTATTTTTAGTAGAGAGAGGGTTTCACC 8516 | | | |||| || |||||||| ||||||||||||| ||||||| || Sbjct 61 TCATGTCTACCTACCATGCTCGGCTAATTTCGCATTTTTTAGTAGAGATGGGGTTTCTCC 120 Query 8517 ATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCATGTGATCCACCTGCCTCGGCCTCCC 8576 |||||| |||||| | || ||||||| |||||| |||||||||| ||| |||||| | Sbjct 121 ATGTTGAACAGGCTAGACTTGAACTCCCAACCTCAGGTGATCCACCCACCTTGGCCTCTC 180 Query 8577 AAAGTGCTGGGATTACAGGCATGAGCCACCGCGCC 8611 | |||||||| |||||||| | |||||| | ||| Sbjct 181 AGAGTGCTGGAATTACAGGTGTAAGCCACTGTGCC 215 >seq7257 Length=513 Score = 138 bits (152), Expect = 1e-27 Identities = 93/104 (89%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 8514 ACCATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCATGTGATCCACCTGCCTCGGCCT 8573 |||||||||||||||||||||| ||||||| |||||| ||| |||||| ||||| |||| Sbjct 513 ACCATGTTGGCCAGGCTGGTCTTGAACTCCCAACCTCAAGTGGTCCACCCGCCTCAGCCT 454 Query 8574 CCCAAAGTGCTGGGATTACAGGCATGAGCCACCGCGCCTGGCCC 8617 ||||||||||||||||||||| |||||||||||| || ||||| Sbjct 453 CCCAAAGTGCTGGGATTACAGCCATGAGCCACCGTGCTCGGCCC 410 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521300257801400