Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20pulex_20[genbank_20GCA_5F000187875.1_202011-02-04] 5,186 sequences; 197,206,209 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq5 150 2e-31 >seq5 Length=2511979 Score = 150 bits (166), Expect = 2e-31 Identities = 257/370 (69%), Gaps = 2/370 (1%) Strand=Plus/Plus Query 16186 GTGTTTAAACATTAGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTC 16245 |||||| ||||| | |||||||| || ||| | || || ||||| ||| ||||| Sbjct 2471902 GTGTTTGAACATGACGCACGCGAAATCAGTATGCAAACCCTCATCTCTTGAGATCAGTTC 2471961 Query 16246 GTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAA 16305 || || || || || || ||||| ||||| || || | ||| || || || ||||| Sbjct 2471962 ATTTGAGAAGGTCAAGCCAGGCATCAAACCTCGCTTTTTAAGCCAAAAGATAGCTGCAAA 2472021 Query 16306 TGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGT 16365 ||||| || ||||| || || || || | |||||||| | | || ||| ||| | Sbjct 2472022 GGACCCAGAGAAGAAAATTCCTTCCACTGCGGCAAAAGCAACGATTCTTTCACTGTAAGG 2472081 Query 16366 AGCATCTTTATTACGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCAT 16425 ||||||||||| | |||||| ||| | ||||||| ||||| | || ||| ||| Sbjct 2472082 TGCATCTTTATTGCCAATCCACTTCATTGCCCATTCAGCTTTCTTAGCGATGCAAGGCAT 2472141 Query 16426 CGTTTCTATGGCCTT-AAACAATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAA 16484 || |||| || || ||| || || | | | | ||| | ||||| || |||| Sbjct 2472142 TGTCTCTACAGCATTGAAAAGCCTTGTCCTCTCAGCGGA-ATCCTTGATATAAGTTTCAA 2472200 Query 16485 TCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGC 16544 | || | ||||||||||| ||||| || || || ||||| || || || |||||||| | Sbjct 2472201 TGAGCAGGCTGTACATTTCAGAGTGGATATTTTCCATGGCAATTTGGAAACCATAGAAAC 2472260 Query 16545 ATCGAGCCTC 16554 | ||||| || Sbjct 2472261 AGCGAGCTTC 2472270 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511381247561520