Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20pulex_20[genbank_20GCA_5F000187875.1_202011-02-04] 5,186 sequences; 197,206,209 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq28 111 1e-19 >seq28 Length=1197646 Score = 111 bits (122), Expect = 1e-19 Identities = 179/255 (70%), Gaps = 2/255 (1%) Strand=Plus/Minus Query 101753 GTGACATGAGCAATCATGCAAGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCCT 101812 |||||||||||||||||||| || | | |||||| ||||| ||||| || || || || Sbjct 525693 GTGACATGAGCAATCATGCATGTCAGCAAAGAATAACTAGCTATGTTGAAAGGGACACCC 525634 Query 101813 AACCCCATATCAGCTGATCTTTGATACAGTTGACAGGAAAGCTTTCCATCACAGACATAA 101872 || ||||||||||| ||||||||||||| |||||| || || | || | || || Sbjct 525633 AAACCCATATCAGCAGATCTTTGATACATTTGACAAGACAGTTCGCCGTTTGCTACGTAG 525574 Query 101873 AATTGACTTAATACATGACAAGGCGGCAACACCAT-TTTAGGAATGTCTGAAACATTCCA 101931 || ||| || ||| || |||||||| |||| | | |||| | ||| |||||| Sbjct 525573 AACTGAGCCAAACAATGGCACGGCGGCAATGCCATCAGTGGTAATG-CCGAAGGATTCCA 525515 Query 101932 AGCACACATTAACATCCTTCTATCTGTAGGGTTTGTTTTTATAGTATCAATCAACTGTTT 101991 ||| | | ||| | || ||| ||| || || || || | ||||| | ||| Sbjct 525514 AGCTGTAAGGATCATGCGTCGATCATCAGGATTGGTGCGGATTGTGTTTATCAAATTTTT 525455 Query 101992 TAATTGGTCAACTCC 102006 || ||| ||||| || Sbjct 525454 TAGTTGATCAACCCC 525440 Score = 105 bits (116), Expect = 5e-18 Identities = 179/257 (70%), Gaps = 2/257 (1%) Strand=Plus/Plus Query 101753 GTGACATGAGCAATCATGCAAGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCCT 101812 |||||| ||||||||||||| || | | |||||| ||||| ||||| || || || || Sbjct 534676 GTGACACGAGCAATCATGCATGTCAGCAAAGAATAACTAGCTATGTTGAAAGGGACACCC 534735 Query 101813 AACCCCATATCAGCTGATCTTTGATACAGTTGACAGGAAAGCTTTCCATCACAGACATAA 101872 || |||| |||||| ||||||||||||| |||||| || || | || | || || Sbjct 534736 AAACCCACATCAGCAGATCTTTGATACATTTGACAAGACAGTTCGCCGTTTGCTACGTAG 534795 Query 101873 AATTGACTTAATACATGACAAGGCGGCAACACCAT-TTTAGGAATGTCTGAAACATTCCA 101931 || ||| || ||| || |||||||| |||| | | |||| | ||| |||||| Sbjct 534796 AACTGAGCCAAACAATGGCACGGCGGCAATGCCATCAGTGGTAATG-CCGAAGGATTCCA 534854 Query 101932 AGCACACATTAACATCCTTCTATCTGTAGGGTTTGTTTTTATAGTATCAATCAACTGTTT 101991 ||| | | ||| | || ||| ||| || || || || | ||||| | ||| Sbjct 534855 AGCTGTAAGGATCATGCGTCGATCATCAGGATTGGTGCGGATTGTGTTTATCAAATTTTT 534914 Query 101992 TAATTGGTCAACTCCTT 102008 || ||| ||||| |||| Sbjct 534915 TAGTTGATCAACCCCTT 534931 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361228367343686