Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20pulex_20[genbank_20GCA_5F000187875.1_202011-02-04] 5,186 sequences; 197,206,209 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq25 100 2e-16 >seq25 Length=1288025 Score = 100 bits (110), Expect = 2e-16 Identities = 162/233 (70%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 20947 TTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCG 21006 |||| |||| ||| | ||| || | |||| || || ||||| || |||||||| || | Sbjct 1056830 TTCCTCCTCTCAGACGGAGGACTAAGTGCAGGGTAGATTCCTTCTGGATGTTATAATCAG 1056771 Query 21007 CCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGG 21066 || ||| | | || |||||||||||||| ||| | || | | |||||| || | Sbjct 1056770 ACAAGGTACGACCATCTTCCAGCTGTTTGCCAGCAAAGATCAAACGCTGCTGATCTGGTG 1056711 Query 21067 GCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCG 21126 | | ||| ||||| || ||||| || || | ||| ||||||| ||||| Sbjct 1056710 GAATGCCCTCCTTATCTTGAATCTTGGCCTTAACATTCTCGATAGTATCAGAAGGCTCAA 1056651 Query 21127 TTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTTG 21179 || | ||| ||||||||||| || || || |||||||| || ||||| ||| Sbjct 1056650 CCTCAAGGGTGATGGTCTTGCCAGTCAATGTCTTGACAAAGATCTGCATCTTG 1056598 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 || |||| ||| | |||||||||||| |||||||| || |||| || || | | || Sbjct 1060198 AGGACCAAATGAAGAGTGGACTCCTTCTGAATGTTGTAATCCGAAAGAGTACGTCCATCT 1060139 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 || || || || || ||| ||||||| | ||||||||| || | ||||||||||| Sbjct 1060138 TCAAGTTGCTTTCCAGCAAAAATAAGACGCTGCTGGTCAGGAGGGATTCCTTCCTTGTCT 1060079 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 |||||| ||| || | | | || || ||||| ||| | ||| ||||| Sbjct 1060078 TGGATCTTAGCTTTGACGTTCTCAATGGTGTCTGACGGCTCAACTTCGAGGGTGATGGTT 1060019 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || || || || || || || || || ||||| Sbjct 1060018 TTTCCTGTCAAGGTCTTCACGAAAATCTGCAT 1059987 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422232511371176