Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20pulex_20[genbank_20GCA_5F000187875.1_202011-02-04] 5,186 sequences; 197,206,209 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq11 111 2e-19 seq25 84.2 2e-11 >seq11 Length=2187803 Score = 111 bits (122), Expect = 2e-19 Identities = 139/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 |||||||| || ||||| || || || ||||| || ||||||||| | || ||||| | Sbjct 911130 AAAATGCAGATCTTCGTCAAGACCCTGACGGGTAAGACCATCACCCTTGAGGTCGAGCCT 911189 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 | |||| | | ||| |||||| |||||| | ||||| || || ||||| | ||| Sbjct 911190 TCAGACACCATCGAAAATGTCAAGGCAAAAATCCAAGACAAGGAAGGTATCCCTCCTGAC 911249 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 ||||| ||| | |||| || |||||||| || || || | || || || |||||| Sbjct 911250 CAGCAGCGATTGATCTTTGCTGGCAAACAACTTGAAGATGGACGTACTCTATCTGACTAC 911309 Query 40867 AACATCCAGAA 40877 ||||| ||||| Sbjct 911310 AACATTCAGAA 911320 >seq25 Length=1288025 Score = 84.2 bits (92), Expect = 2e-11 Identities = 143/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || | || || |||||||||||| |||| || || | | Sbjct 1059987 ATGCAGATTTTCGTGAAGACCTTGACAGGAAAAACCATCACCCTCGAAGTTGAGCCGTCA 1060046 Query 40750 GACAGC-GTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | || |||| |||| | || || | ||||| || || ||||| | ||||| Sbjct 1060047 GACACCATTGAGAACG-TCAAAGCTAAGATCCAAGACAAGGAAGGAATCCCTCCTGACCA 1060105 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || || | || || || || || || || | || || || || ||||| Sbjct 1060106 GCAGCGTCTTATTTTTGCTGGAAAGCAACTTGAAGATGGACGTACTCTTTCGGATTACAA 1060165 Query 40869 CATCCAGAAGGAGGCCACGCTGCAT 40893 ||| ||||||||| |||| || ||| Sbjct 1060166 CATTCAGAAGGAGTCCACTCTTCAT 1060190 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515185800915360