Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20pulex_20[genbank_20GCA_5F000187875.1_202011-02-04] 5,186 sequences; 197,206,209 total letters Query= NC_001987.1 Length=108409 Score E Sequences producing significant alignments: (Bits) Value seq28 93.3 3e-14 >seq28 Length=1197646 Score = 93.3 bits (102), Expect = 3e-14 Identities = 175/255 (69%), Gaps = 2/255 (1%) Strand=Plus/Minus Query 97117 GTGACATGGGCGATCATACAAGTTAATAGAGAATAGCTAGCAATGTTAAAAGGCACCCCT 97176 |||||||| || ||||| || || | | |||||| ||||| ||||| ||||| || || Sbjct 525693 GTGACATGAGCAATCATGCATGTCAGCAAAGAATAACTAGCTATGTTGAAAGGGACACCC 525634 Query 97177 AGTCCCATATCAGCTGATCTTTGATATAACTGACAGGAAAGCTTTCCATCACACACATAA 97236 | ||||||||||| ||||||||||| | ||||| || || | || | || || Sbjct 525633 AAACCCATATCAGCAGATCTTTGATACATTTGACAAGACAGTTCGCCGTTTGCTACGTAG 525574 Query 97237 AACTGACTCAATACATGACAGGGGGGCAACGCCATTTTTGG-AACATCTAAGACATTCCA 97295 |||||| ||| ||| || || ||||| ||||| ||| || | ||| |||||| Sbjct 525573 AACTGAGCCAAACAATGGCACGGCGGCAATGCCATCAGTGGTAATGCCGAAG-GATTCCA 525515 Query 97296 AGCACACATCAACATTCTTCTATCGGTTGGGTTTGTGTGTATGGTATTAATTATCTGCTT 97355 ||| | | ||| | || ||| || || ||| | || || || || | | || Sbjct 525514 AGCTGTAAGGATCATGCGTCGATCATCAGGATTGGTGCGGATTGTGTTTATCAAATTTTT 525455 Query 97356 TAATTGATCAACGCC 97370 || ||||||||| || Sbjct 525454 TAGTTGATCAACCCC 525440 Score = 87.8 bits (96), Expect = 1e-12 Identities = 175/257 (68%), Gaps = 2/257 (1%) Strand=Plus/Plus Query 97117 GTGACATGGGCGATCATACAAGTTAATAGAGAATAGCTAGCAATGTTAAAAGGCACCCCT 97176 |||||| | || ||||| || || | | |||||| ||||| ||||| ||||| || || Sbjct 534676 GTGACACGAGCAATCATGCATGTCAGCAAAGAATAACTAGCTATGTTGAAAGGGACACCC 534735 Query 97177 AGTCCCATATCAGCTGATCTTTGATATAACTGACAGGAAAGCTTTCCATCACACACATAA 97236 | |||| |||||| ||||||||||| | ||||| || || | || | || || Sbjct 534736 AAACCCACATCAGCAGATCTTTGATACATTTGACAAGACAGTTCGCCGTTTGCTACGTAG 534795 Query 97237 AACTGACTCAATACATGACAGGGGGGCAACGCCATTTTTGG-AACATCTAAGACATTCCA 97295 |||||| ||| ||| || || ||||| ||||| ||| || | ||| |||||| Sbjct 534796 AACTGAGCCAAACAATGGCACGGCGGCAATGCCATCAGTGGTAATGCCGAAG-GATTCCA 534854 Query 97296 AGCACACATCAACATTCTTCTATCGGTTGGGTTTGTGTGTATGGTATTAATTATCTGCTT 97355 ||| | | ||| | || ||| || || ||| | || || || || | | || Sbjct 534855 AGCTGTAAGGATCATGCGTCGATCATCAGGATTGGTGCGGATTGTGTTTATCAAATTTTT 534914 Query 97356 TAATTGATCAACGCCTT 97372 || ||||||||| |||| Sbjct 534915 TAGTTGATCAACCCCTT 534931 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346762081734020