Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20pulex_20[genbank_20GCA_5F000187875.1_202011-02-04] 5,186 sequences; 197,206,209 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq28 91.5 2e-13 seq25 89.7 8e-13 >seq28 Length=1197646 Score = 91.5 bits (100), Expect = 2e-13 Identities = 74/90 (82%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 205449 ATGTGCAATCATATAAGTCAATAAACTATAACTAGCAACATTAAATGGTACACCTAAACC 205508 ||| |||||||| | |||| ||| ||||||||| | || || || ||||| ||||| Sbjct 525688 ATGAGCAATCATGCATGTCAGCAAAGAATAACTAGCTATGTTGAAAGGGACACCCAAACC 525629 Query 205509 CATATCAGCTGATCTTTGATACATTTGACA 205538 ||||||||| |||||||||||||||||||| Sbjct 525628 CATATCAGCAGATCTTTGATACATTTGACA 525599 Score = 84.2 bits (92), Expect = 3e-11 Identities = 70/86 (81%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 205453 GCAATCATATAAGTCAATAAACTATAACTAGCAACATTAAATGGTACACCTAAACCCATA 205512 |||||||| | |||| ||| ||||||||| | || || || ||||| ||||||| | Sbjct 534685 GCAATCATGCATGTCAGCAAAGAATAACTAGCTATGTTGAAAGGGACACCCAAACCCACA 534744 Query 205513 TCAGCTGATCTTTGATACATTTGACA 205538 ||||| |||||||||||||||||||| Sbjct 534745 TCAGCAGATCTTTGATACATTTGACA 534770 >seq25 Length=1288025 Score = 89.7 bits (98), Expect = 8e-13 Identities = 97/129 (75%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 124640 AGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCG 124699 ||| || ||||| ||||| ||| | || || || || || |||||||| |||||| |||| Sbjct 1057111 AGGCATCCCACCCGATCAGCAACGTCTCATCTTCGCCGGCAAACAATTGGAGGATGGTCG 1057170 Query 124700 AACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACG 124759 || | || || || ||||| || || ||||| || |||||||| ||||||||||| Sbjct 1057171 TACTCTGTCCGACTACAACATTCAGAAGGAGTCAACATTACATTTGGTATTACGTTTACG 1057230 Query 124760 AGGTGGTAT 124768 || || || Sbjct 1057231 CGGAGGCAT 1057239 Score = 89.7 bits (98), Expect = 8e-13 Identities = 97/129 (75%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 124640 AGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCG 124699 |||||| ||||||||||| || | || || ||||| || ||||| | || ||| |||| Sbjct 1059860 AGGTATCCCACCTGATCAGCAGCGTCTCATCTTTGCCGGTAAACAGCTGGAAGATGGTCG 1059919 Query 124700 AACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACG 124759 ||||| |||||| || || ||||| || || ||| | || |||||| | ||||| | Sbjct 1059920 TACATTGTCAGATTACAACATCCAAAAGGAGTCTACTCTCCACTTGGTTCTGCGTTTGAG 1059979 Query 124760 AGGTGGTAT 124768 ||| ||||| Sbjct 1059980 AGGAGGTAT 1059988 Score = 89.7 bits (98), Expect = 8e-13 Identities = 160/234 (68%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || || | ||||| | ||||| ||||| || || | || |||| | Sbjct 1059987 ATGCAGATTTTCGTGAAGACCTTGACAGGAAAAACCATCACCCTCGAAGTTGAGCCGTCA 1060046 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| || | ||| || || ||||| || ||||| || || ||||| || Sbjct 1060047 GACACCATTGAGAACGTCAAAGCTAAGATCCAAGACAAGGAAGGAATCCCTCCTGACCAG 1060106 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || | ||||||||||| ||||| ||| | || ||| | || || | ||||| || Sbjct 1060107 CAGCGTCTTATTTTTGCTGGAAAGCAACTTGAAGATGGACGTACTCTTTCGGATTACAAC 1060166 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAA 124772 ||||| || || || ||| | |||||||| | ||| | || ||||||||| || Sbjct 1060167 ATTCAGAAGGAGTCCACTCTTCATTTGGTCCTTCGTCTTCGCGGTGGTATTTAA 1060220 Score = 86.0 bits (94), Expect = 9e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | |||||| | || ||||| || || || | ||| |||| | | Sbjct 1056602 ATGCAGATCTTTGTCAAGACATTGACTGGCAAGACCATCACCCTTGAGGTTGAGCCTTCT 1056661 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| || ||| | || || ||||||||||| || || || ||||| ||||| Sbjct 1056662 GATACTATCGAGAATGTTAAGGCCAAGATTCAAGATAAGGAGGGCATTCCACCAGATCAG 1056721 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || | | || ||||| || ||||| | || ||| |||| || || |||||||| Sbjct 1056722 CAGCGTTTGATCTTTGCTGGCAAACAGCTGGAAGATGGTCGTACCTTGTCTGATTATAAC 1056781 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || || || ||||| || |||| || || | ||| | |||| || || Sbjct 1056782 ATCCAGAAGGAATCTACCCTGCACTTAGTCCTCCGTCTGAGAGGAGGAAT 1056831 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755407027564800