Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20pulex_20[genbank_20GCA_5F000187875.1_202011-02-04] 5,186 sequences; 197,206,209 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq25 109 5e-19 seq11 104 2e-17 >seq25 Length=1288025 Score = 109 bits (120), Expect = 5e-19 Identities = 156/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 || ||||| | ||||| || || || ||||| ||||| || || || ||| || Sbjct 1056810 ACTAAGTGCAGGGTAGATTCCTTCTGGATGTTATAATCAGACAAGGTACGACCATCTTCC 1056751 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 |||||||| ||||| |||| | |||||||||||| || || ||||||||||| ||| | Sbjct 1056750 AGCTGTTTGCCAGCAAAGATCAAACGCTGCTGATCTGGTGGAATGCCCTCCTTATCTTGA 1056691 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || ||||| | |||| || || | ||| ||||| | ||| | || ||| Sbjct 1056690 ATCTTGGCCTTAACATTCTCGATAGTATCAGAAGGCTCAACCTCAAGGGTGATGGTCTTG 1056631 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCATGGCTTATTCT 118748 || |||| || || ||||| |||||||| ||| |||| Sbjct 1056630 CCAGTCAATGTCTTGACAAAGATCTGCAT--CTTGTTCT 1056594 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 ||||| || | || ||||| || |||||||||||||| | ||| || ||| || Sbjct 1060195 ACCAAATGAAGAGTGGACTCCTTCTGAATGTTGTAATCCGAAAGAGTACGTCCATCTTCA 1060136 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 || || |||||||| | || ||||||||||| || ||||| || || ||||||||| Sbjct 1060135 AGTTGCTTTCCAGCAAAAATAAGACGCTGCTGGTCAGGAGGGATTCCTTCCTTGTCTTGG 1060076 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || ||| || | || | |||||| | ||| || |||| ||| | ||||| Sbjct 1060075 ATCTTAGCTTTGACGTTCTCAATGGTGTCTGACGGCTCAACTTCGAGGGTGATGGTTTTT 1060016 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || |||| || || || ||||||||||| Sbjct 1060015 CCTGTCAAGGTCTTCACGAAAATCTGCAT 1059987 Score = 104 bits (114), Expect = 2e-17 Identities = 98/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 ||||||||||| | || ||||| || | ||| ||||| || ||||||||||| ||| | Sbjct 1057236 CCTCCGCGTAAACGTAATACCAAATGTAATGTTGACTCCTTCTGAATGTTGTAGTCGGAC 1057177 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 | ||| || |||||| | ||||| || ||| |||||||||| ||||||||||| || Sbjct 1057176 AGAGTACGACCATCCTCCAATTGTTTGCCGGCGAAGATGAGACGTTGCTGATCGGGTGGG 1057117 Query 118632 ATGCC 118636 ||||| Sbjct 1057116 ATGCC 1057112 Score = 104 bits (114), Expect = 2e-17 Identities = 99/127 (78%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| || | ||| | ||| |||||||| | ||||||||||| || |||||||||||| Sbjct 1059590 TACCACCTCTTAAACGCAAGACCAAGTGAAGAGTAGACTCTTTCTGGATGTTGTAATCGG 1059531 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 || ||| || ||| || ||||| || |||||| | || | ||||||||||||||||| Sbjct 1059530 ACAGAGTACGACCATCTTCCAGCTGCTTACCAGCGAAAATTAAACGCTGCTGATCGGGAG 1059471 Query 118630 GTATGCC 118636 | || || Sbjct 1059470 GAATACC 1059464 Score = 98.7 bits (108), Expect = 9e-16 Identities = 86/107 (80%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||| | || ||||||||||| ||||||||||| || ||| || ||| ||| Sbjct 1057609 ACCAAGTGAAGAGTCGACTCTTTTTGGATGTTGTAATCAGACAAAGTACGGCCATCTTCG 1057550 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCC 118636 ||||| ||||||||| | || ||||||||||||||||| || || || Sbjct 1057549 AGCTGCTTTCCAGCGAAAATTAGACGCTGCTGATCGGGCGGAATACC 1057503 Score = 95.1 bits (104), Expect = 1e-14 Identities = 85/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||| | || ||||| ||||| |||||||||||| || || || ||||||| Sbjct 1058789 ACCAAGTGAAGAGTCGACTCCTTTTGGATGTTGTAATCGGACAAGGTACGACCATCCTCG 1058730 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCC 118636 ||||| ||||| || |||||||||||||||| ||||| || || || Sbjct 1058729 AGCTGCTTTCCGGCAAAGATGAGACGCTGCTGGTCGGGTGGGATACC 1058683 Score = 95.1 bits (104), Expect = 1e-14 Identities = 97/127 (76%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 ||||||| | || | || |||||||||| |||||||| ||||| ||||||||||| Sbjct 1059987 TACCTCCTCTCAAACGCAGAACCAAGTGGAGAGTAGACTCCTTTTGGATGTTGTAATCTG 1059928 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 || || || ||| || |||||||| || || ||||||||||||||||||| || | Sbjct 1059927 ACAATGTACGACCATCTTCCAGCTGTTTACCGGCAAAGATGAGACGCTGCTGATCAGGTG 1059868 Query 118630 GTATGCC 118636 | || || Sbjct 1059867 GGATACC 1059861 Score = 89.7 bits (98), Expect = 4e-13 Identities = 96/127 (76%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 ||||||| | || | ||| |||||||| | |||||||| || || ||||||||||| Sbjct 1058410 TACCTCCTCTCAAACGCAAGACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAATCTG 1058351 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 || || || ||| || |||||||| || || ||||||||||||||||||| || | Sbjct 1058350 ACAAGGTACGACCATCTTCCAGCTGTTTACCGGCAAAGATGAGACGCTGCTGATCAGGTG 1058291 Query 118630 GTATGCC 118636 | || || Sbjct 1058290 GGATACC 1058284 Score = 89.7 bits (98), Expect = 4e-13 Identities = 84/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||||| || ||||| |||||||||||||| ||| | ||| || ||| || Sbjct 1059179 ACCAAGTGGAGGGTTGACTCCTTTTGAATGTTGTAGTCGGATAGAGTACGACCATCTTCC 1059120 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCC 118636 | ||| || |||||| | || |||||||||||||||||||| || || Sbjct 1059119 AACTGCTTACCAGCGAAAATCAGACGCTGCTGATCGGGAGGAATACC 1059073 >seq11 Length=2187803 Score = 104 bits (114), Expect = 2e-17 Identities = 137/190 (72%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 118549 CTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGA 118608 |||| ||||||||||| || | ||| || ||| || || ||||| ||||| ||| Sbjct 911322 CTTTCTGAATGTTGTAGTCAGATAGAGTACGTCCATCTTCAAGTTGTTTGCCAGCAAAGA 911263 Query 118609 TGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTT 118668 | | |||||||| || ||||| || || ||||||||| |||||| || || | || Sbjct 911262 TCAATCGCTGCTGGTCAGGAGGGATACCTTCCTTGTCTTGGATTTTTGCCTTGACATTTT 911203 Query 118669 CGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAA 118728 ||| |||||| | ||||||||| | ||| | || || || ||||| || || || | Sbjct 911202 CGATGGTGTCTGAAGGCTCGACCTCAAGGGTGATGGTCTTACCCGTCAGGGTCTTGACGA 911143 Query 118729 AAATCTGCAT 118738 | |||||||| Sbjct 911142 AGATCTGCAT 911133 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433802980020712