Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20pulex_20[genbank_20GCA_5F000187875.1_202011-02-04] 5,186 sequences; 197,206,209 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq5 158 1e-33 >seq5 Length=2511979 Score = 158 bits (174), Expect = 1e-33 Identities = 260/373 (70%), Gaps = 4/373 (1%) Strand=Plus/Plus Query 16217 AAGTGTTTAAACATTATACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAAC 16276 |||||||| ||||| | || || |||||| |||||| || || || || || | Sbjct 2471900 AAGTGTTTGAACATGACGCACGCGAAATCAGTATGCAAACCCTCATCTCTTGAGATCAGT 2471959 Query 16277 TCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCA 16336 || ||||| || || | || ||||| | ||||| ||||||| |||||| ||||| ||| Sbjct 2471960 TCATTTGAGAAGGTCAAGCCAGGCATCAAACCTCGCTTTTTAAGCCAAAAGATAGCTGCA 2472019 Query 16337 AATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTAC 16396 || || ||||| ||||| || ||||| ||||||||||| ||||| | || |||| ||| Sbjct 2472020 AAGGACCCAGAGAAGAAAATTCCTTCCACTGCGGCAAAAGCAACGATTCTTTCACTGTAA 2472079 Query 16397 GTTCTAtttttactttctatccattttttagcccaatttgctttttgtttAACACAGTTC 16456 | | || |||| | | ||||| || | ||||| | ||||| | | || | Sbjct 2472080 GGTGCATCTTTATTGCCAATCCACTTCATTGCCCATTCAGCTTTCTTAGCGATGCAAGGC 2472139 Query 16457 ATGTTCTCTATTGCATTAAATAAATAAtttttttCTTTGC--TATCTAAAATATAAGTAT 16514 || |||||| ||||| | ||| || | ||| || ||| |||||||| | Sbjct 2472140 ATTGTCTCTACAGCATTGA--AAAGCCTTGTCCTCTCAGCGGAATCCTTGATATAAGTTT 2472197 Query 16515 CTATTAGTAAACTATACATTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAA 16574 | || || | || |||||||| || || ||||| ||||| || || || |||||||| | Sbjct 2472198 CAATGAGCAGGCTGTACATTTCAGAGTGGATATTTTCCATGGCAATTTGGAAACCATAGA 2472257 Query 16575 AGCATCTAGCTTC 16587 | || | |||||| Sbjct 2472258 AACAGCGAGCTTC 2472270 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462482017659600