Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20pulex_20[genbank_20GCA_5F000187875.1_202011-02-04] 5,186 sequences; 197,206,209 total letters Query= NC_002686.2 Length=124784 Score E Sequences producing significant alignments: (Bits) Value seq28 120 2e-22 >seq28 Length=1197646 Score = 120 bits (132), Expect = 2e-22 Identities = 127/165 (77%), Gaps = 2/165 (1%) Strand=Plus/Plus Query 20401 ATGGCTTTGCCTCCATGTCATATGCTATGC-CAATTTTACGTTGCTAATAATGAATTGTC 20459 ||||| ||||| || || ||| || | || || || ||||| || || ||| |||| Sbjct 525539 ATGGCATTGCCGCCGTGCCAT-TGTTTGGCTCAGTTCTACGTAGCAAACGGCGAACTGTC 525597 Query 20460 GTGTCAAATGTATCAACGATCCGCTGATATGGGACTGGGTGTTCCTTTCAATATTGCAAG 20519 ||||||||||||||| |||| ||||||||||| ||||||| |||||||| || || || Sbjct 525598 TTGTCAAATGTATCAAAGATCTGCTGATATGGGTTTGGGTGTCCCTTTCAACATAGCTAG 525657 Query 20520 TTATGCGCTGCTTACGTATATGATTGCACATGTTACAGATTTAAA 20564 |||| | |||| || | |||||||| ||||| |||| ||||| Sbjct 525658 TTATTCTTTGCTGACATGCATGATTGCTCATGTCACAGGATTAAA 525702 Score = 111 bits (122), Expect = 1e-19 Identities = 125/165 (76%), Gaps = 2/165 (1%) Strand=Plus/Minus Query 20401 ATGGCTTTGCCTCCATGTCATATGCTATGC-CAATTTTACGTTGCTAATAATGAATTGTC 20459 ||||| ||||| || || ||| || | || || || ||||| || || ||| |||| Sbjct 534830 ATGGCATTGCCGCCGTGCCAT-TGTTTGGCTCAGTTCTACGTAGCAAACGGCGAACTGTC 534772 Query 20460 GTGTCAAATGTATCAACGATCCGCTGATATGGGACTGGGTGTTCCTTTCAATATTGCAAG 20519 ||||||||||||||| |||| |||||| |||| ||||||| |||||||| || || || Sbjct 534771 TTGTCAAATGTATCAAAGATCTGCTGATGTGGGTTTGGGTGTCCCTTTCAACATAGCTAG 534712 Query 20520 TTATGCGCTGCTTACGTATATGATTGCACATGTTACAGATTTAAA 20564 |||| | |||| || | |||||||| | ||| |||| ||||| Sbjct 534711 TTATTCTTTGCTGACATGCATGATTGCTCGTGTCACAGGATTAAA 534667 Score = 86.0 bits (94), Expect = 5e-12 Identities = 77/97 (79%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 20679 TCGAACTGTTAAAGATATTAACGATTTTAAAGCTGATGATTTTGTGTTAGAAGGTTATAA 20738 ||||| || | |||||| ||||||||||||||||||||||||| || || || ||| | Sbjct 525910 TCGAAAAGTAAGCGATATTGACGATTTTAAAGCTGATGATTTTGTTTTGGAGGGATATGA 525969 Query 20739 TCCCCATAATTCAATTCCAATGGAAATGTCTGTTTAA 20775 ||||||| ||||| ||||| ||| |||||||| Sbjct 525970 TCCCCATCCGAAGATTCCCATGGACATGGCTGTTTAA 526006 Score = 86.0 bits (94), Expect = 5e-12 Identities = 77/97 (79%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 20679 TCGAACTGTTAAAGATATTAACGATTTTAAAGCTGATGATTTTGTGTTAGAAGGTTATAA 20738 ||||| || | |||||| ||||||||||||||||||||||||| || || || ||| | Sbjct 534459 TCGAAAAGTAAGCGATATTGACGATTTTAAAGCTGATGATTTTGTTTTGGAGGGATATGA 534400 Query 20739 TCCCCATAATTCAATTCCAATGGAAATGTCTGTTTAA 20775 ||||||| ||||| ||||| ||| |||||||| Sbjct 534399 TCCCCATCCGAAGATTCCCATGGACATGGCTGTTTAA 534363 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399158769824770