Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20pulex_20[genbank_20GCA_5F000187875.1_202011-02-04] 5,186 sequences; 197,206,209 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq5 176 4e-39 >seq5 Length=2511979 Score = 176 bits (194), Expect = 4e-39 Identities = 262/370 (71%), Gaps = 4/370 (1%) Strand=Plus/Plus Query 14189 TGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCG 14248 ||||| || || | ||||| |||||| ||| | ||||||||||| || ||||| Sbjct 2471903 TGTTTGAACATGACGCACGCGAAATCAGTATGCAAACCCTCATCTCTTGAGATCAGTTCA 2471962 Query 14249 TTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAAT 14308 ||||| || || || || |||||||| ||||| ||||| | |||||| || || || || Sbjct 2471963 TTTGAGAAGGTCAAGCCAGGCATCAAACCTCGCTTTTTAAGCCAAAAGATAGCTGCAAAG 2472022 Query 14309 GATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGAT 14368 || || || ||||| ||||| || ||||| ||||| || | | || ||| | | | | Sbjct 2472023 GACCCAGAGAAGAAAATTCCTTCCACTGCGGCAAAAGCAACGATTCTTTCACTGTAAGGT 2472082 Query 14369 GCTTTTTTGTTCGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATT 14428 || | ||| || ||||| || | |||||||||| ||| || || || |||| Sbjct 2472083 GCATCTTTATTGCCAATCCACTTCATTGCCCATTCAGCTTTCTTAGCGATGCAAGGCATT 2472142 Query 14429 GTTTCAATAGCATT--AAATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAA 14486 || || | |||||| ||| ||| | || | | |||| || || || |||| Sbjct 2472143 GTCTCTACAGCATTGAAAAGCCTTGTCCTCTCAGCGGAATCCTTG--ATATAAGTTTCAA 2472200 Query 14487 TAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAAC 14546 | || | ||| |||||||||||||| || |||||||| || || || |||||||| |||| Sbjct 2472201 TGAGCAGGCTGTACATTTCAGAGTGGATATTTTCCATGGCAATTTGGAAACCATAGAAAC 2472260 Query 14547 ATCTAGCTTC 14556 | | |||||| Sbjct 2472261 AGCGAGCTTC 2472270 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482314331946480