Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20pulex_20[genbank_20GCA_5F000187875.1_202011-02-04] 5,186 sequences; 197,206,209 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq25 129 5e-25 seq5 113 4e-20 seq18 100 3e-16 seq11 91.5 1e-13 >seq25 Length=1288025 Score = 129 bits (142), Expect = 5e-25 Identities = 168/230 (73%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| |||||||| ||||| ||||||| ||||| |||||| |||| ||||| ||||| Sbjct 1059987 ATGCAGATTTTCGTGAAGACCTTGACAGGAAAAACCATCACCCTCGAAGTTGAGCCGTCA 1060046 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | |||||| | || ||||||||||| | || || |||||| Sbjct 1060047 GACACCATTGAGAACGTCAAAGCTAAGATCCAAGACAAGGAAGGAATCCCTCCTGACCAG 1060106 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTATAA 31371 |||||||| || || ||||| || || | ||||| | | | ||| | ||||| || Sbjct 1060107 CAGCGTCTTATTTTTGCTGGAAAGCAACTTGAAGA-TGGACGTACTCTTTCGGATTACAA 1060165 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 |||||| || || || ||||||||| |||| ||| | || | || |||| Sbjct 1060166 CATTCAGAAGGAGTCCACTCTTCATTTGGTCCTTCGTCTTCGCGGTGGTA 1060215 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| || || || ||||| |||| ||||| || |||||| | || ||||| || Sbjct 1056599 AAGATGCAGATCTTTGTCAAGACATTGACTGGCAAGACCATCACCCTTGAGGTTGAGCCT 1056658 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 || || | | |||| | || || | || || ||||| ||| | || || || Sbjct 1056659 TCTGATACTATCGAGAATGTTAAGGCCAAGATTCAAGATAAGGAGGGCATTCCACCAGAT 1056718 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 ||||||||| | || || |||||||||||| ||||||| | || || |||||| Sbjct 1056719 CAGCAGCGTTTGATCTTTGCTGGCAAACAGCTGGAAGATGGTCGTACCTTGTCTGATTAT 1056778 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||||| || || ||||| || || || | || || | ||||| || || Sbjct 1056779 AACATCCAGAAGGAATCTACCCTGCACTTAGTCCTCCGTCTGAGAGGAGG 1056828 Score = 84.2 bits (92), Expect = 2e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 31301 CCGCCCGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATG 31360 |||||||| |||||||||||||| |||||||| || ||| | ||||| ||| || Sbjct 1057509 CCGCCCGATCAGCAGCGTCTAATTTTCGCTGGAAAGCAGCTCGAAGATGGCCGTACTTTG 1057568 Query 31361 AGCGATTATAACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||||| ||||| |||||||| ||||||||||| |||| || Sbjct 1057569 TCTGATTACAACATCCAAAAAGAGTCGACTCTTCACTTGGTTCT 1057612 >seq5 Length=2511979 Score = 113 bits (124), Expect = 4e-20 Identities = 239/357 (67%), Gaps = 10/357 (3%) Strand=Plus/Minus Query 57780 TGCTTTTACGGATTTCAAGTGGCCATTGAAAACGTGCATTCAGAAATGTATTCGCTACTC 57839 || || || || || ||| | ||||| ||||| | || || |||||||| || ||| Sbjct 2472261 TGTTTCTATGGTTTCCAAATTGCCATGGAAAATATCCACTCTGAAATGTACAGCCTGCTC 2472202 Query 57840 ATCGATACGTACGTGAAGGACAACGACGAGAAACGTAGACTGTTCAACGCGATCGAAACA 57899 || || || || | ||||| || |||| || || ||||| || | || ||| Sbjct 2472201 ATTGAAACTTATATCAAGGATTCCGCTGAGAGGACAAGGCTTTTCAATGCTGTAGAGACA 2472142 Query 57900 ATGCCCGCGATCGCCAAGAAGGCAGAGTGGTCAATCAAATGGAT-----AAAAAGCGCCA 57954 ||||| ||||| ||||| || || ||| |||| || ||||| | |||| || Sbjct 2472141 ATGCCTTGCATCGCTAAGAAAGCTGAATGGGCAATGAAGTGGATTGGCAATAAAGATGCA 2472082 Query 57955 CGGCCACGTTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGG 58014 | | | | || || | | || || ||||| || ||||| || ||||| || | Sbjct 2472081 C-----CTTACAGTGAAAGAATCGTTGCTTTTGCCGCAGTGGAAGGAATTTTCTTCTCTG 2472027 Query 58015 GCAGCTTTGCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTA 58074 | |||||| || || |||||| | || || || || ||||||| ||| |||| || Sbjct 2472026 GGTCCTTTGCAGCTATCTTTTGGCTTAAAAAGCGAGGTTTGATGCCTGGCTTGACCTTCT 2471967 Query 58075 GCAACGAGTTGATATCGCGCGACGAGGGTCTCCATACTGATTTTGCGTGCCTAATGT 58131 || || |||| || | || |||||| | ||||||||||| |||||| | |||| Sbjct 2471966 CAAATGAACTGATCTCAAGAGATGAGGGTTTGCATACTGATTTCGCGTGCGTCATGT 2471910 >seq18 Length=1446981 Score = 100 bits (110), Expect = 3e-16 Identities = 112/150 (75%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 23341 TTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCG 23400 |||||| |||| |||||| ||||| || ||||| |||||||| || | || || || || Sbjct 597617 TTCAACACGTCGCATAAACAGATCGGGAATCCAGAGAGCGTAAAATAAATCACGCGCACG 597558 Query 23401 CACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCA 23460 || ||||||||||| || || |||||||| | ||| || ||||| || | |||||| Sbjct 597557 ATTTTCTTCTTTGCCGGTATTTTTCTTCAAATCGAGAAAATCGAACACATCAGAATGCCA 597498 Query 23461 CGGCTCGAGGTAAACGGCAAACGCGCCCGG 23490 || || | ||| | ||||| || || || Sbjct 597497 AGGTTCCAAGTAGATTGCAAATGCTCCGGG 597468 >seq11 Length=2187803 Score = 91.5 bits (100), Expect = 1e-13 Identities = 115/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| || ||||| ||||| ||||| || || || |||||| | || || || || Sbjct 911130 AAAATGCAGATCTTCGTCAAGACCCTGACGGGTAAGACCATCACCCTTGAGGTCGAGCCT 911189 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 || |||| |||||| ||||| | ||| ||||||||||| | || || ||| Sbjct 911190 TCAGACACCATCGAAAATGTCAAGGCAAAAATCCAAGACAAGGAAGGTATCCCTCCTGAC 911249 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 |||||||| | || || ||||||||||| | ||||| Sbjct 911250 CAGCAGCGATTGATCTTTGCTGGCAAACAACTTGAAGA 911287 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445737503193120