Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20pulex_20[genbank_20GCA_5F000187875.1_202011-02-04] 5,186 sequences; 197,206,209 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq5 143 3e-29 seq18 127 3e-24 >seq5 Length=2511979 Score = 143 bits (158), Expect = 3e-29 Identities = 261/380 (69%), Gaps = 3/380 (1%) Strand=Plus/Plus Query 33564 AAATGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAAT 33623 || ||||| ||||| | || |||||||| |||| |||||| ||||| || | | Sbjct 2471900 AAGTGTTTGAACATGACGCACGCGAAATCAGTATGCAAACCCTCATCTCTTGAGATCAGT 2471959 Query 33624 TCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCG 33683 || || || || || | || ||||| | || ||||||||||||||||| || | || Sbjct 2471960 TCATTTGAGAAGGTCAAGCCAGGCATCAAACCTCGCTTTTTAAGCCAAAAGATAGCTGCA 2472019 Query 33684 AATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAA 33743 || || || || ||||| |||||||| ||||| ||||| |||| | ||| || | ||| Sbjct 2472020 AAGGACCCAGAGAAGAAAATTCCTTCCACTGCGGCAAAAGCAACGATTCTTTCACTGTAA 2472079 Query 33744 CCGGC-GCTGTCATG--TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGC 33800 || || | || |||||||| ||||| || || ||||| | |||||| Sbjct 2472080 GGTGCATCTTTATTGCCAATCCACTTCATTGCCCATTCAGCTTTCTTAGCGATGCAAGGC 2472139 Query 33801 ATCGTTTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCG 33860 || || |||| ||||| || || | | ||| ||| || | |||||| || Sbjct 2472140 ATTGTCTCTACAGCATTGAAAAGCCTTGTCCTCTCAGCGGAATCCTTGATATAAGTTTCA 2472199 Query 33861 ATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAA 33920 || | || || |||||||| || || || ||||| ||||| || || || || |||||| Sbjct 2472200 ATGAGCAGGCTGTACATTTCAGAGTGGATATTTTCCATGGCAATTTGGAAACCATAGAAA 2472259 Query 33921 CATCTAGCCTCGGTAATCTG 33940 || | ||| || | || ||| Sbjct 2472260 CAGCGAGCTTCAGGAACCTG 2472279 >seq18 Length=1446981 Score = 127 bits (140), Expect = 3e-24 Identities = 156/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 63188 TTCGAACTCGTCTCCCCAAACATTGTCCAATCTAGGACATTCATCCGGACACATCAACGA 63247 ||||||||| ||||||||| | |||||| || ||||||| |||||||||| || Sbjct 597692 TTCGAACTCTTCTCCCCAAGTGTCAGCCAATCCTGGGCATTCATGAGGACACATCAGTGA 597633 Query 63248 CCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAA 63307 ||| || || ||| | || ||| |||||| ||||| |||||||| ||||| ||| Sbjct 597632 CCAATCGCCATCAGATTCAACACGTCGCATAAACAGATCGGGAATCCAGAGAGCGTAAAA 597573 Query 63308 TAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 63367 || ||| | | | || ||| || || || ||||| || || | |||||| || | | Sbjct 597572 TAAATCACGCGCACGATTTTCTTCTTTGCCGGTATTTTTCTTCAAATCGAGAAAATCGAA 597513 Query 63368 AATATCAGAATGCCACGGTTCCAAGTATATGGC 63400 | |||||||||||| ||||||||||| || || Sbjct 597512 CACATCAGAATGCCAAGGTTCCAAGTAGATTGC 597480 Score = 114 bits (126), Expect = 2e-20 Identities = 131/176 (74%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 63669 GCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTC 63728 |||| ||| | ||| |||||||| || || ||||| ||||| || || | ||||||||| Sbjct 597075 GCATAAAACAGGGTGGGAGAAGCATGAGTGAACCACTTTTCCGACAGCAAATTGTACGTT 597016 Query 63729 TCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGC 63788 ||||| || | ||| |||||| |||||| || |||| || | ||| | || |||| Sbjct 597015 TCAATGGCAGCGTCAATATCCTCCCCATGAATACCAACTGACACTCTCATCATCAAGTGC 596956 Query 63789 TGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGT 63844 ||||| | ||| || ||| | |||||||||||||||||||| || ||||| Sbjct 596955 TGAGGACGTTCCACTGGTTTACCATCAATTTTCAACAAGTAGGATTTCTCTAAAGT 596900 Score = 96.9 bits (106), Expect = 4e-15 Identities = 89/113 (79%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 62387 TACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCAC 62446 ||| ||||||||||| ||||| || || || ||||||||| || || | ||| | Sbjct 598786 TACCTGGAATTCTCCCGACAAAACCCTGCGGACATAAATATTAGAAGTGTATGCTTCAAT 598727 Query 62447 CGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCA 62499 ||| ||||||||||||| |||||| ||||| || || || ||||||||||||| Sbjct 598726 CGATTCATTATTTCCCAGAATTTGCGCAGTCGAAGCTGTGGGCATAGGTGCCA 598674 Score = 87.8 bits (96), Expect = 2e-12 Identities = 90/118 (76%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 62997 ATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTG 63056 ||||| ||||| | ||| || || ||||| || || ||||| |||||||| ||| | Sbjct 597974 ATCTCTGTGCACAAATTGCTGCATTTGATGGTACCCAAATTCTGTTGATTCGACTTGCGG 597915 Query 63057 TTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAA 63114 || || |||||||| || | ||| |||| || ||||||||||| || ||||| |||| Sbjct 597914 TTGCAGGCATCCTTGTACAAGATGTATGGGGTGCCAGTTTCAATTTGCGATTCAATAA 597857 Score = 84.2 bits (92), Expect = 3e-11 Identities = 117/164 (71%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 62634 TCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAATGCACCGTAATAAATG 62693 ||||||| || || ||||| || | ||| || || || || |||||||||||| Sbjct 598468 TCATATGTACCCAACTGTTCAGCGAGCTCACACGAAGCTTCCAAAGCGCCGTAATAAATG 598409 Query 62694 GTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCAAATGGATAATTTAAG 62753 |||||||| || | ||| ||||| ||| || || || |||||||| || | Sbjct 598408 GTTTCAAAAATGTGCTTGTTTAGCAATTGCGCCTCTTCACTGTCAAATGGGTAGCGCATC 598349 Query 62754 AGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGG 62797 |||||||| || ||||| || |||||||| ||||| || || || Sbjct 598348 AGAATAAAAGCATCCGCCAAGCCTTGAACTCCAATTCCAATTGG 598305 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629776772074080