Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20pulex_20[genbank_20GCA_5F000187875.1_202011-02-04] 5,186 sequences; 197,206,209 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq5 174 1e-38 >seq5 Length=2511979 Score = 174 bits (192), Expect = 1e-38 Identities = 272/387 (70%), Gaps = 13/387 (3%) Strand=Plus/Plus Query 11612 AAATGTTTAAACATTAAACACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGT 11671 || ||||| ||||| | ||||| |||||| ||| ||||| || ||||| || ||| Sbjct 2471900 AAGTGTTTGAACATGACGCACGCGAAATCAGTATGCAAACCCTCATCTCTTGAGATCAGT 2471959 Query 11672 TCATTAGAAAATGTTAATCCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCA 11731 ||||| || || || || || |||||||| ||||| ||||| | |||||| ||||| ||| Sbjct 2471960 TCATTTGAGAAGGTCAAGCCAGGCATCAAACCTCGCTTTTTAAGCCAAAAGATAGCTGCA 2472019 Query 11732 AATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATAT 11791 || || ||||| ||||| ||||| ||||| || ||||| || || | |||||| | || Sbjct 2472020 AAGGACCCAGAGAAGAAAATTCCTTCCACTGCGGCAAAAGCAACGATTCTTTCACTGTAA 2472079 Query 11792 A------CCTTGTTGCTAGATATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCAT 11845 | || |||| | ||||| || | ||||| ||||||||||| | ||| Sbjct 2472080 GGTGCATCTTTATTGCCA---ATCCACTTCATTGCCCATTCAGCTTTCTTAGCGATGCAA 2472136 Query 11846 TCCATTGTTTCTATAGCGTTAAATAAATGCATTT--TTTCTATATTATCTCTTACATATG 11903 |||||| |||| ||| || | ||| | | | | || ||| | | ||| | Sbjct 2472137 GGCATTGTCTCTACAGCATTGA--AAAGCCTTGTCCTCTCAGCGGAATCCTTGATATAAG 2472194 Query 11904 TATCTATTAATAAACTATACATTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCAT 11963 | || || | | || |||||||| || || ||||||||||| || ||||| || |||| Sbjct 2472195 TTTCAATGAGCAGGCTGTACATTTCAGAGTGGATATTTTCCATGGCAATTTGGAAACCAT 2472254 Query 11964 AGAAACATCGTGCCTCTGAACACTGTA 11990 ||||||| || || || | | ||||| Sbjct 2472255 AGAAACAGCGAGCTTCAGGAACCTGTA 2472281 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468494427879840