Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20pulex_20[genbank_20GCA_5F000187875.1_202011-02-04] 5,186 sequences; 197,206,209 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq5 178 2e-39 seq18 132 6e-26 >seq5 Length=2511979 Score = 178 bits (196), Expect = 2e-39 Identities = 270/382 (71%), Gaps = 3/382 (1%) Strand=Plus/Plus Query 36140 AAATGTTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAAT 36199 || ||||| ||||| | || |||||||| || | |||||| ||||| || | | Sbjct 2471900 AAGTGTTTGAACATGACGCACGCGAAATCAGTATGCAAACCCTCATCTCTTGAGATCAGT 2471959 Query 36200 TCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA 36259 || || || || || | || ||||| | || ||||||||||||||||| || | ||| Sbjct 2471960 TCATTTGAGAAGGTCAAGCCAGGCATCAAACCTCGCTTTTTAAGCCAAAAGATAGCTGCA 2472019 Query 36260 AATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAA 36319 || || ||||| |||||||||||||| ||||| ||||| |||| | ||| || | ||| Sbjct 2472020 AAGGACCCAGAGAAGAAAATTCCTTCCACTGCGGCAAAAGCAACGATTCTTTCACTGTAA 2472079 Query 36320 CCGGCA-CTGTCATG--TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGC 36376 ||| || | || |||||||| ||||| || || ||||| | |||||| Sbjct 2472080 GGTGCATCTTTATTGCCAATCCACTTCATTGCCCATTCAGCTTTCTTAGCGATGCAAGGC 2472139 Query 36377 ATTGTCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCA 36436 |||||||||| |||||| || || | | ||| ||| || | ||| || ||| Sbjct 2472140 ATTGTCTCTACAGCATTGAAAAGCCTTGTCCTCTCAGCGGAATCCTTGATATAAGTTTCA 2472199 Query 36437 ATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAA 36496 || | || || |||||||| || || || ||||| ||||| ||||| || || |||||| Sbjct 2472200 ATGAGCAGGCTGTACATTTCAGAGTGGATATTTTCCATGGCAATTTGGAAACCATAGAAA 2472259 Query 36497 CATCTAGCCTCGGTAATCTGTA 36518 || | ||| || | || ||||| Sbjct 2472260 CAGCGAGCTTCAGGAACCTGTA 2472281 >seq18 Length=1446981 Score = 132 bits (146), Expect = 6e-26 Identities = 157/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 65981 TTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGA 66040 ||||||||| ||||||||| | ||||||| || ||||||| |||||||||| || Sbjct 597692 TTCGAACTCTTCTCCCCAAGTGTCAGCCAATCCTGGGCATTCATGAGGACACATCAGTGA 597633 Query 66041 CCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAA 66100 ||| || || ||| | || ||| |||||| ||||| |||||||| ||||| ||| Sbjct 597632 CCAATCGCCATCAGATTCAACACGTCGCATAAACAGATCGGGAATCCAGAGAGCGTAAAA 597573 Query 66101 TAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 66160 |||||| | | | || ||| || || || ||||| || || | |||||| || | | Sbjct 597572 TAAATCACGCGCACGATTTTCTTCTTTGCCGGTATTTTTCTTCAAATCGAGAAAATCGAA 597513 Query 66161 AATATCATAATGCCACGGTTCCAAGTATATGGC 66193 | |||| ||||||| ||||||||||| || || Sbjct 597512 CACATCAGAATGCCAAGGTTCCAAGTAGATTGC 597480 Score = 111 bits (122), Expect = 2e-19 Identities = 130/176 (74%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 66462 GCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTC 66521 |||| ||| | ||| |||||||| || || ||||| ||||| || || | ||||||||| Sbjct 597075 GCATAAAACAGGGTGGGAGAAGCATGAGTGAACCACTTTTCCGACAGCAAATTGTACGTT 597016 Query 66522 TCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGC 66581 ||||| || | ||| |||||| |||||| || |||| || | ||| | || |||| Sbjct 597015 TCAATGGCAGCGTCAATATCCTCCCCATGAATACCAACTGACACTCTCATCATCAAGTGC 596956 Query 66582 TGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGT 66637 ||||| | ||| || || | |||||||||||||||||||| || ||||| Sbjct 596955 TGAGGACGTTCCACTGGTTTACCATCAATTTTCAACAAGTAGGATTTCTCTAAAGT 596900 Score = 95.1 bits (104), Expect = 2e-14 Identities = 114/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 66810 TTTTTTGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTATAATGGCATAATCC 66869 ||||| ||||||||||| || || || || ||||| | || |||| |||||||| || Sbjct 596600 TTTTTGGTTTCTTTGTGAAGGTTAGAAACAGCTATGCGTGCAGCTAGGATGGCATAGTCT 596541 Query 66870 GGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTT 66929 ||||||| || || || || ||| |||| || || ||| |||||||||| || ||| Sbjct 596540 GGATGTTTAGTGGTCATTGTTGCAGCTGTTTCAGCAGCAAGATTGTCCAATTCAACAGTT 596481 Query 66930 GTTACTCCATTATATATTCCTTGGATAACCTTCAT 66964 || || ||| ||| | || | || |||||||| Sbjct 596480 GTAACACCAGGATAGAGACCATTAATCACCTTCAT 596446 Score = 91.5 bits (100), Expect = 2e-13 Identities = 91/118 (77%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 65790 ATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTG 65849 ||||| ||||| | ||| || || |||||||| || ||||| |||||||| ||| | Sbjct 597974 ATCTCTGTGCACAAATTGCTGCATTTGATGGTACCCAAATTCTGTTGATTCGACTTGCGG 597915 Query 65850 TTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAA 65907 || || |||||||| || | ||| |||| || ||||||||||| || ||||| |||| Sbjct 597914 TTGCAGGCATCCTTGTACAAGATGTATGGGGTGCCAGTTTCAATTTGCGATTCAATAA 597857 Score = 87.8 bits (96), Expect = 2e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 65180 TACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCAC 65239 ||| || |||||||| ||||| || || || ||||||||| || || | ||| | Sbjct 598786 TACCTGGAATTCTCCCGACAAAACCCTGCGGACATAAATATTAGAAGTGTATGCTTCAAT 598727 Query 65240 AGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCA 65292 || ||||||||||||| |||||| ||||| || || || ||||||||||||| Sbjct 598726 CGATTCATTATTTCCCAGAATTTGCGCAGTCGAAGCTGTGGGCATAGGTGCCA 598674 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658130133948240