Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20pulex_20[genbank_20GCA_5F000187875.1_202011-02-04] 5,186 sequences; 197,206,209 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq25 107 2e-18 >seq25 Length=1288025 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| | ||| | |||||||| | ||||| || || || ||||||||||| | Sbjct 1056828 CCTCCTCTCAGACGGAGGACTAAGTGCAGGGTAGATTCCTTCTGGATGTTATAATCAGAC 1056769 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | ||||| |||||||| |||||| |||||| ||| |||||||| || || Sbjct 1056768 AAGGTACGACCATCTTCCAGCTGTTTGCCAGCAAAGATCAAACGCTGCTGATCTGGTGGA 1056709 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGC-TGTTCCACTGTGTCGGTGGGCTCCAC 139716 ||||| || || || ||| | || | ||| | | || | || || | ||||| || Sbjct 1056708 ATGCCCTCCTTATC-TTGAATCTTGGCCTTAACATTCTCGATAGTATCAGAAGGCTCAAC 1056650 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||| ||| | |||||||| ||||| || || || || || ||||| Sbjct 1056649 CTCAAGGGTGATGGTCTTGCCAGTCAATGTCTTGACAAAGATCTGCAT 1056602 Score = 96.9 bits (106), Expect = 3e-15 Identities = 97/126 (77%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| ||||||||| || ||||||| ||||||||||| || ||||| |||||| | Sbjct 1059588 CCACCTCTTAAACGCAAGACCAAGTGAAGAGTAGACTCTTTCTGGATGTTGTAATCGGAC 1059529 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | ||||| ||||| |||||||| | || | ||| |||||||||||||| Sbjct 1059528 AGAGTACGACCATCTTCCAGCTGCTTACCAGCGAAAATTAAACGCTGCTGATCGGGAGGA 1059469 Query 139658 ATGCCT 139663 || ||| Sbjct 1059468 ATACCT 1059463 Score = 93.3 bits (102), Expect = 4e-14 Identities = 96/126 (76%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| ||||||| ||| ||||| | |||||||| ||||| ||||| ||||| | Sbjct 1059985 CCTCCTCTCAAACGCAGAACCAAGTGGAGAGTAGACTCCTTTTGGATGTTGTAATCTGAC 1059926 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | ||| | ||||| ||||||||||| ||| |||| ||||| |||||||| || || Sbjct 1059925 AATGTACGACCATCTTCCAGCTGTTTACCGGCAAAGATGAGACGCTGCTGATCAGGTGGG 1059866 Query 139658 ATGCCT 139663 || ||| Sbjct 1059865 ATACCT 1059860 Score = 87.8 bits (96), Expect = 2e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| |||||||| || ||||||| |||||||| || || ||||| ||||| | Sbjct 1058408 CCTCCTCTCAAACGCAAGACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAATCTGAC 1058349 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | ||||| ||||||||||| ||| |||| ||||| |||||||| || || Sbjct 1058348 AAGGTACGACCATCTTCCAGCTGTTTACCGGCAAAGATGAGACGCTGCTGATCAGGTGGG 1058289 Query 139658 ATGCCT 139663 || ||| Sbjct 1058288 ATACCT 1058283 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496031842651200