Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20pulex_20[genbank_20GCA_5F000187875.1_202011-02-04] 5,186 sequences; 197,206,209 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq5 170 3e-37 seq18 134 2e-26 >seq5 Length=2511979 Score = 170 bits (188), Expect = 3e-37 Identities = 267/380 (70%), Gaps = 3/380 (1%) Strand=Plus/Plus Query 49942 AAATGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGT 50001 || ||||| ||||| | || |||||||| |||| |||||| ||||| || ||| Sbjct 2471900 AAGTGTTTGAACATGACGCACGCGAAATCAGTATGCAAACCCTCATCTCTTGAGATCAGT 2471959 Query 50002 TCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA 50061 || || || || || | || ||||| | || ||||||||||||||||| || | ||| Sbjct 2471960 TCATTTGAGAAGGTCAAGCCAGGCATCAAACCTCGCTTTTTAAGCCAAAAGATAGCTGCA 2472019 Query 50062 AATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAA 50121 || |||||||| ||||| |||||||| ||||||||||| ||||| | ||| || | ||| Sbjct 2472020 AAGGACCCAGAGAAGAAAATTCCTTCCACTGCGGCAAAAGCAACGATTCTTTCACTGTAA 2472079 Query 50122 -CTGGCGCTGTCATG--TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGC 50178 || || | || |||||||| ||||| || || ||||| | |||||| Sbjct 2472080 GGTGCATCTTTATTGCCAATCCACTTCATTGCCCATTCAGCTTTCTTAGCGATGCAAGGC 2472139 Query 50179 ATCGTTTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCG 50238 || || |||| ||||| || || | | ||| ||| || | |||||| || Sbjct 2472140 ATTGTCTCTACAGCATTGAAAAGCCTTGTCCTCTCAGCGGAATCCTTGATATAAGTTTCA 2472199 Query 50239 ATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAA 50298 || | || || |||||||| || || || ||||| ||||| || || || || |||||| Sbjct 2472200 ATGAGCAGGCTGTACATTTCAGAGTGGATATTTTCCATGGCAATTTGGAAACCATAGAAA 2472259 Query 50299 CATCTAGCCTCGGTAATCTG 50318 || | ||| || | || ||| Sbjct 2472260 CAGCGAGCTTCAGGAACCTG 2472279 >seq18 Length=1446981 Score = 134 bits (148), Expect = 2e-26 Identities = 164/224 (73%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 79849 GTATATAATCGTTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGA 79908 ||||||| ||||||||| ||||||||| || | ||||| || ||||| | |||| Sbjct 597703 GTATATAGGGCTTCGAACTCTTCTCCCCAAGTGTCAGCCAATCCTGGGCATTCATGAGGA 597644 Query 79909 CACATCAACGACCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAA 79968 ||||||| ||||| || |||||| | || ||| |||||| ||||| |||||||| Sbjct 597643 CACATCAGTGACCAATCGCCATCAGATTCAACACGTCGCATAAACAGATCGGGAATCCAG 597584 Query 79969 AGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCG 80028 ||||| ||||| ||| | | | || || || || || ||||| || || | |||| Sbjct 597583 AGAGCGTAAAATAAATCACGCGCACGATTTTCTTCTTTGCCGGTATTTTTCTTCAAATCG 597524 Query 80029 AGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGC 80072 || || | | | |||||||||||| ||||||||||| || || Sbjct 597523 AGAAAATCGAACACATCAGAATGCCAAGGTTCCAAGTAGATTGC 597480 Score = 105 bits (116), Expect = 1e-17 Identities = 129/176 (73%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 80341 GCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTC 80400 |||| ||| | ||| |||||||| || || ||||| ||||| ||||| | ||||||||| Sbjct 597075 GCATAAAACAGGGTGGGAGAAGCATGAGTGAACCACTTTTCCGACAGCAAATTGTACGTT 597016 Query 80401 TCAATAGCTGATTCTATATCCCATTGATGAATTCCTACCGCGACACGCATTAACATGTGC 80460 ||||| || | || |||||| |||||| || || | || | ||| | || |||| Sbjct 597015 TCAATGGCAGCGTCAATATCCTCCCCATGAATACCAACTGACACTCTCATCATCAAGTGC 596956 Query 80461 TGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAAAGT 80516 ||||| | ||| || || || |||||||||||||| ||||| || ||||| Sbjct 596955 TGAGGACGTTCCACTGGTTTACCATCAATTTTCAACAAGTAGGATTTCTCTAAAGT 596900 Score = 100 bits (110), Expect = 4e-16 Identities = 90/113 (80%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 79059 TACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCAC 79118 ||| || |||||||| ||||| || || || ||||||||| || |||| ||| | Sbjct 598786 TACCTGGAATTCTCCCGACAAAACCCTGCGGACATAAATATTAGAAGTGTATGCTTCAAT 598727 Query 79119 CGATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCA 79171 ||||||||||||||||| |||||| ||||| || || || ||||||||||||| Sbjct 598726 CGATTCATTATTTCCCAGAATTTGCGCAGTCGAAGCTGTGGGCATAGGTGCCA 598674 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718222238225040