Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20pulex_20[genbank_20GCA_5F000187875.1_202011-02-04] 5,186 sequences; 197,206,209 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq5 179 4e-40 >seq5 Length=2511979 Score = 179 bits (198), Expect = 4e-40 Identities = 264/370 (71%), Gaps = 4/370 (1%) Strand=Plus/Plus Query 13857 TGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCG 13916 ||||| || || | ||||| |||||| ||| | ||||||||||| || ||||| Sbjct 2471903 TGTTTGAACATGACGCACGCGAAATCAGTATGCAAACCCTCATCTCTTGAGATCAGTTCA 2471962 Query 13917 TTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAAT 13976 ||||| || || || || |||||||| ||||| ||||| | |||||| || || ||||| Sbjct 2471963 TTTGAGAAGGTCAAGCCAGGCATCAAACCTCGCTTTTTAAGCCAAAAGATAGCTGCAAAG 2472022 Query 13977 GACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGAT 14036 ||||| || ||||| ||||| || ||||| ||||| || | | || ||| | | | | Sbjct 2472023 GACCCAGAGAAGAAAATTCCTTCCACTGCGGCAAAAGCAACGATTCTTTCACTGTAAGGT 2472082 Query 14037 GCTTTTTTGTTCGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATT 14096 || | ||| || ||||| || | |||||||||| ||| || || || |||| Sbjct 2472083 GCATCTTTATTGCCAATCCACTTCATTGCCCATTCAGCTTTCTTAGCGATGCAAGGCATT 2472142 Query 14097 GTTTCAATAGCATT-AAATAAATATTCCT-TCTCTTTAGTACTTGAAATGTATGTATCAA 14154 || || | |||||| ||| | |||| || | | |||| || || || |||| Sbjct 2472143 GTCTCTACAGCATTGAAAAGCCTTGTCCTCTCAGCGGAATCCTTG--ATATAAGTTTCAA 2472200 Query 14155 TAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGC 14214 | || | ||| |||||||||||||| || |||||||| || || || |||||||| || | Sbjct 2472201 TGAGCAGGCTGTACATTTCAGAGTGGATATTTTCCATGGCAATTTGGAAACCATAGAAAC 2472260 Query 14215 ATCTAGCTTC 14224 | | |||||| Sbjct 2472261 AGCGAGCTTC 2472270 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479696901632400